{"id":"W3122070792","doi":"10.1093/g3journal/jkab006","title":"Reference genome assembly for Australian<i>Ascochyta lentis</i>isolate Al4","year":2021,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genetic and Environmental Crop Studies","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Grains Research and Development Corporation; National Cancer Institute; Australian Government; National Computational Infrastructure","keywords":"Biology; Genome; Genetics; Contig; Ascochyta; Transposable element; Synteny; Sequence assembly; Whole genome sequencing; Blight; Secondary metabolite; Gene; Botany","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001246915,0.0003195633,0.000334532,0.00001213223,0.0004147388,0.0001071983,0.0003777632,0.000160238,0.0005283712],"category_scores_gemma":[0.000003789194,0.0001665161,0.000185279,0.0002243133,0.0001071984,0.00004296553,0.0003214918,0.0000978816,0.0001817189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004557312,"about_ca_system_score_gemma":0.00002193672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002198316,"about_ca_topic_score_gemma":0.000304233,"domain_scores_codex":[0.9979731,0.00005574142,0.0003760177,0.0006617637,0.0002563022,0.0006770407],"domain_scores_gemma":[0.999323,0.0000711284,0.0001183425,0.0001991374,0.0001070023,0.0001814557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001166129,0.00006166969,0.003627682,0.00001905638,0.00005458721,0.000007010753,0.00005588464,0.0001476295,0.5937586,0.00002515258,0.0004519843,0.4017791],"study_design_scores_gemma":[0.0002275463,0.0002876092,0.07081054,0.000007491616,0.00006896364,0.00002273447,0.0005151572,0.00002873543,0.04597344,0.0002814954,0.881335,0.0004413206],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7623543,0.233995,0.00008736952,0.001302309,0.0003441031,0.0003983718,0.0003548521,0.00006179078,0.001102008],"genre_scores_gemma":[0.8325765,0.1457667,0.005164268,0.0005810875,0.000609897,0.0001066192,0.0005194597,0.000009593615,0.0146659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.880883,"threshold_uncertainty_score":0.679033,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0495467307706802,"score_gpt":0.2401560350469551,"score_spread":0.1906093042762749,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}