{"id":"W3122173354","doi":"10.1093/cid/ciab067","title":"Transcontinental Dissemination of the L2b/D-Da Recombinant <i>Chlamydia trachomatis</i> Lymphogranuloma venereum (LGV) Strain: Need of Broad Multi-Country Molecular Surveillance","year":2021,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Programa Operacional Temático Factores de Competitividade","keywords":"Lymphogranuloma venereum; Chlamydia trachomatis; Virology; Recombinant DNA; Men who have sex with men; Chlamydiaceae; Microbiology; Chlamydia; Genotype; Strain (injury); Biology; Medicine; Gene; Genetics; Human immunodeficiency virus (HIV); Syphilis; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006058072,0.0002343926,0.0006381082,0.00009426186,0.0001703755,0.00002443841,0.0002891095,0.0002965273,0.0002534275],"category_scores_gemma":[0.003575575,0.0001893988,0.0006155274,0.0006307152,0.001033907,0.0001204723,0.00009495328,0.0004291678,0.00002248639],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005798211,"about_ca_system_score_gemma":0.0003043685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001473187,"about_ca_topic_score_gemma":0.0001290654,"domain_scores_codex":[0.9966787,0.001311459,0.0009917623,0.0005402533,0.0001353966,0.0003424402],"domain_scores_gemma":[0.9969615,0.001282999,0.0004061049,0.0007878069,0.0005007855,0.00006075901],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008263703,0.003836254,0.7299017,0.0001253509,0.0004099074,0.00001109235,0.00005973093,0.00004302379,0.2532016,0.0003209154,0.0003182387,0.01168958],"study_design_scores_gemma":[0.001976513,0.0001523599,0.9344389,0.0001423142,0.0001269229,0.00004820219,0.0001045709,0.00001652444,0.06215279,0.000167073,0.0004867643,0.0001870495],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923413,0.003971111,0.0003331143,0.0001709443,0.001787518,0.0004575286,0.000475523,0.00006854912,0.0003944348],"genre_scores_gemma":[0.9988124,0.0004357068,0.00001311613,0.00004640199,0.00004258705,0.0000471314,0.0002057397,0.00002961079,0.0003672971],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2045373,"threshold_uncertainty_score":0.7723459,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01774249190943756,"score_gpt":0.3336056291643059,"score_spread":0.3158631372548683,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}