{"id":"W3122422297","doi":"10.21423/aabppro20183211","title":"Distinct bacterial metacommunities inhabit the upper and lower respiratory tract of healthy feedlot cattle and those diagnosed with bronchopneumonia","year":2018,"lang":"en","type":"article","venue":"American Association of Bovine Practitioners Conference Proceedings","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"","keywords":"Bronchopneumonia; Respiratory tract; Bovine respiratory disease; Respiratory system; Respiratory tract infections; Feedlot; Biology; Colonization; Microbiology; Medicine; Virology; Internal medicine; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002989943,0.0002545886,0.0003736419,0.001111508,0.0006383744,0.0007246013,0.0001590708,0.0004282939,0.0007922658],"category_scores_gemma":[0.0008285914,0.0001901987,0.00014529,0.0004359812,0.0004366968,0.0005033269,0.0004380542,0.0002541075,0.0001238792],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004683305,"about_ca_system_score_gemma":0.0002808416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007525852,"about_ca_topic_score_gemma":0.01588615,"domain_scores_codex":[0.999499,0.00007148601,0.00004173498,0.0001057204,0.00007810815,0.000203909],"domain_scores_gemma":[0.9995827,0.00006789609,0.0001482198,0.00001203291,0.00004941063,0.000139707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004966349,0.0001067198,0.9820127,0.00002849427,0.0000246068,0.0001462196,0.0007428674,0.00002184544,0.01319522,0.00002656279,0.00004162713,0.003156358],"study_design_scores_gemma":[0.00000360781,0.0002287554,0.9979498,0.000007080623,0.00001143522,0.0002503926,0.001122428,0.00006736963,0.0002549418,0.00001504238,0.00008653501,0.000002726194],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996537,0.0001324314,0.00002692443,0.000008661388,0.000001889431,0.000003127916,0.00003646424,6.975465e-7,0.0001361206],"genre_scores_gemma":[0.9995955,0.00009171656,0.00007517552,0.00001627545,0.00000550345,0.000004554222,0.00009907802,5.209908e-7,0.0001118153],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007525852,"threshold_uncertainty_score":0.0149641,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01747154804925705,"score_gpt":0.2808431059379727,"score_spread":0.2633715578887156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}