{"id":"W3122639671","doi":"10.20944/preprints202002.0038.v1","title":"Changes in DNA Methylation in Response to 6-Benzylaminopurine Affect Allele-Specific Gene Expression in <em>Populus tomentosa</em>","year":2020,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western Forest Products; Canadian Forest Service","funders":"","keywords":"DNA methylation; Biology; Differentially methylated regions; Genetics; Gene; Methylation; Bisulfite sequencing; RNA-Directed DNA Methylation; Gene expression; Allele; Epigenetics; Regulation of gene expression; Illumina Methylation Assay; Molecular biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001262348,0.000313019,0.0002244716,0.0003414758,0.0001155057,0.0002006229,0.0001899645,0.0001997472,0.0007004531],"category_scores_gemma":[0.0001165839,0.0001946843,0.0003050175,0.0002053912,0.0001726972,0.0000864036,0.0002052739,0.0003151913,0.0002182933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001795684,"about_ca_system_score_gemma":0.00009124612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001419055,"about_ca_topic_score_gemma":0.002366838,"domain_scores_codex":[0.9998509,0.00001696634,0.00001086518,0.00006348387,0.00003244072,0.00002538225],"domain_scores_gemma":[0.9998713,0.00002416999,0.00005642541,0.00001315624,0.00001141117,0.00002357479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000305927,0.000003390719,0.0003355068,0.000006846553,0.000006079917,0.00001999753,0.000008421396,0.00001716709,0.9991502,0.00001065558,0.000006293977,0.0004048987],"study_design_scores_gemma":[0.00001558124,0.0001527897,0.1487646,0.000005898827,0.00008866532,0.0004024592,0.00006035325,0.001636445,0.8462999,0.00007799104,0.002477756,0.00001760156],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949896,0.0004065839,0.00310481,0.00003705487,0.000008401995,0.000009615973,0.0009514917,0.00009748311,0.0003949808],"genre_scores_gemma":[0.9934937,0.0002731502,0.00255112,0.00006829776,0.000004734781,0.00002743363,0.0017347,0.00006148408,0.001785315],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001419055,"threshold_uncertainty_score":0.002821624,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1077573793889459,"score_gpt":0.3240565079928714,"score_spread":0.2162991286039255,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}