{"id":"W3122768045","doi":"10.1371/journal.pone.0245333","title":"MinION Nanopore-based detection of Clavibacter nebraskensis, the corn Goss’s wilt pathogen, and bacteriomic profiling of necrotic lesions of naturally-infected leaf samples","year":2021,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Microbiology; Nanopore sequencing; Pathogen; Pseudomonas syringae; Minion; 16S ribosomal RNA; Amplicon; Bacteria; Polymerase chain reaction; Gene; Genetics; DNA sequencing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001761059,0.0003146869,0.0002292209,0.0002840731,0.0001271574,0.0002394959,0.0002198249,0.0002919384,0.0004295509],"category_scores_gemma":[0.0002557164,0.0001613943,0.0002131174,0.0001537945,0.0001509777,0.0002448173,0.0002349821,0.0002108438,0.0001779882],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001891441,"about_ca_system_score_gemma":0.0001091357,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001835905,"about_ca_topic_score_gemma":0.004035156,"domain_scores_codex":[0.9998362,0.00001592846,0.00001037512,0.0000613114,0.00005102417,0.00002513783],"domain_scores_gemma":[0.9998641,0.00003990565,0.00002899827,0.0000091597,0.00003320834,0.00002459046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002181765,0.000005780429,0.0003226081,0.00001115326,0.000001478976,0.000005885697,0.000009143188,0.00002077105,0.9992247,0.000003393689,0.000006073085,0.000367343],"study_design_scores_gemma":[0.000003078292,0.0002386582,0.03584882,0.000006753711,0.00001408491,0.0001408473,0.00007340091,0.002757224,0.9602994,0.00001558915,0.0005898261,0.00001229607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915147,0.00029121,0.006646988,0.00002581616,0.000009799494,0.00004340298,0.0008611022,0.0001484339,0.0004585987],"genre_scores_gemma":[0.9666913,0.0003549561,0.02783175,0.00008553618,0.000007174954,0.0001237948,0.002694614,0.00003787675,0.002173084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001835905,"threshold_uncertainty_score":0.003650367,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04156708086564611,"score_gpt":0.1995302132353683,"score_spread":0.1579631323697222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}