{"id":"W3122768045","doi":"10.1371/journal.pone.0245333","title":"MinION Nanopore-based detection of Clavibacter nebraskensis, the corn Goss’s wilt pathogen, and bacteriomic profiling of necrotic lesions of naturally-infected leaf samples","year":2021,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Microbiology; Nanopore sequencing; Pathogen; Pseudomonas syringae; Minion; 16S ribosomal RNA; Amplicon; Bacteria; Polymerase chain reaction; Gene; Genetics; DNA sequencing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001806022,0.0001519497,0.0004096341,0.00001998682,0.000127045,0.00001516667,0.0001242928,0.000109962,0.00003741894],"category_scores_gemma":[0.0003131416,0.00006202995,0.00009669259,0.000313426,0.0001726126,0.00006798613,0.0001010013,0.0001152962,0.000001010241],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001407533,"about_ca_system_score_gemma":0.00002674637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007629742,"about_ca_topic_score_gemma":0.0005795652,"domain_scores_codex":[0.9987574,0.0001764134,0.0004104732,0.000253239,0.0002150778,0.0001874116],"domain_scores_gemma":[0.9987478,0.0004962754,0.0003311269,0.0001101185,0.0002745302,0.00004020146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000803568,0.0002953951,0.03301071,0.0001128886,0.00009116834,0.000001312672,0.00006461727,3.489085e-7,0.9643193,0.000009331974,0.000002505859,0.002012091],"study_design_scores_gemma":[0.0001260188,0.0001351768,0.4310971,0.0001513826,0.00008308425,0.000003734315,0.0001114379,0.00003017611,0.5681645,0.00001451501,0.00001357215,0.00006937861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984198,0.0004150309,0.000002761828,0.0003078423,0.00005363985,0.00030409,0.0004629288,0.00002351533,0.00001035941],"genre_scores_gemma":[0.99873,0.000217843,0.0007216173,0.00003770079,0.00004392862,0.00001404474,0.0002185062,0.000002096132,0.00001427039],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3980864,"threshold_uncertainty_score":0.2529508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04156708086564611,"score_gpt":0.1995302132353683,"score_spread":0.1579631323697222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}