{"id":"W3122902629","doi":"10.20944/preprints201712.0024.v1","title":"Characterization of HIV-1 near Full-Length Proviral Genome Quasispecies from Patients with Undetectable Viral Load Undergoing First-Line HAART Therapy","year":2017,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Lady Davis Institute for Medical Research; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Ministério da Educação; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; McGill University","keywords":"Viral quasispecies; Viral load; Virology; Context (archaeology); Genome; Virus; Biology; Drug resistance; Resistance mutation; Human immunodeficiency virus (HIV); Antiretroviral therapy; Mutation; Medicine; Genetics; Gene; Polymerase chain reaction; Reverse transcriptase","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001879187,0.0001885907,0.0002886362,0.0005635856,0.0003786388,0.0005822959,0.0001721086,0.0002901147,0.001139534],"category_scores_gemma":[0.0008880884,0.0001477409,0.0001841027,0.0003165978,0.0001698191,0.0001725263,0.0001885922,0.0003188295,0.0003998836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001181396,"about_ca_system_score_gemma":0.0001230764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008919274,"about_ca_topic_score_gemma":0.0006226342,"domain_scores_codex":[0.9998548,0.00002117014,0.00001788783,0.00004824525,0.00002813074,0.00002971471],"domain_scores_gemma":[0.9997371,0.00007330557,0.00005216812,0.00003467813,0.00005216489,0.0000505183],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000803699,0.0001183716,0.4971587,0.0001230455,0.00007427746,0.002290067,0.002132466,0.0004431114,0.4760434,0.0001848737,0.0003222084,0.02030585],"study_design_scores_gemma":[0.00002668395,0.0009262214,0.9330153,0.0000523367,0.0001051966,0.01432041,0.001212284,0.002557476,0.04288832,0.0002275003,0.00463854,0.00002980913],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985935,0.0002571753,0.0004897314,0.00001647084,0.000004431693,0.00001183181,0.000390245,0.000008209361,0.0002284994],"genre_scores_gemma":[0.9965544,0.0002234982,0.001006274,0.00006292685,0.00001163723,0.00001910067,0.001837259,0.00001955233,0.0002654522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001139534,"threshold_uncertainty_score":0.003812075,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05062396860607975,"score_gpt":0.2821931888927138,"score_spread":0.2315692202866341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}