{"id":"W3122985048","doi":"10.1101/2021.01.27.428461","title":"Genome and transcriptome of a pathogenic yeast, <i>Candida nivariensis</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health; Johns Hopkins University","keywords":"Nanopore sequencing; Biology; Contig; Transcriptome; Genome; Genetics; Sequence assembly; DNA sequencing; Gene; Computational biology; De novo transcriptome assembly; Illumina dye sequencing; Minion; RNA-Seq; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001228647,0.0003530889,0.0002318179,0.0003457552,0.000427732,0.000454505,0.0001770957,0.0002566176,0.0006597571],"category_scores_gemma":[0.0001988166,0.0001363172,0.0003837016,0.000475164,0.0001645888,0.0001743178,0.0003059521,0.0004648717,0.0004155841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002869618,"about_ca_system_score_gemma":0.000549772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004403057,"about_ca_topic_score_gemma":0.003716537,"domain_scores_codex":[0.9998873,0.00001060184,0.0000075788,0.00004547758,0.00003424594,0.00001471963],"domain_scores_gemma":[0.999898,0.00001930623,0.0000162576,0.00001425093,0.00003064875,0.00002166848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002442521,0.00003028922,0.002347546,0.0001153233,0.00001285778,0.000189359,0.0001412995,0.0005386623,0.9907211,0.000179608,0.0004184745,0.00506114],"study_design_scores_gemma":[0.0000480785,0.0005245245,0.2148487,0.0001080236,0.0002221125,0.003569004,0.0009300767,0.007686928,0.7241985,0.0008822062,0.04690234,0.0000794162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9625015,0.00129202,0.01185536,0.0002273764,0.00005415505,0.00004755684,0.02036559,0.0005231145,0.003133323],"genre_scores_gemma":[0.8652554,0.00117111,0.03798552,0.0001643061,0.00003561575,0.00007222607,0.0906083,0.0003160366,0.004391521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004403057,"threshold_uncertainty_score":0.008754849,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008056217685804086,"score_gpt":0.1933558575728544,"score_spread":0.1852996398870503,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}