{"id":"W3123093675","doi":"10.3390/jof7020081","title":"Colonisation and Transmission Dynamics of Candida auris among Chronic Respiratory Diseases Patients Hospitalised in a Chest Hospital, Delhi, India: A Comparative Analysis of Whole Genome Sequencing and Microsatellite Typing","year":2021,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"University Grants Commission","keywords":"Candida auris; Genotyping; Typing; Microsatellite; Whole genome sequencing; Biology; Multilocus sequence typing; Transmission (telecommunications); Genotype; Microbiology; Medicine; Genome; Genetics; Gene; Allele","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001524835,0.0002426487,0.0002729165,0.001174371,0.0005015961,0.0008398464,0.0003499532,0.0004559129,0.0007610973],"category_scores_gemma":[0.0006088603,0.0002602189,0.0004122383,0.00148356,0.0004059763,0.0002438563,0.0005595314,0.0005141218,0.000202125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003026166,"about_ca_system_score_gemma":0.0003290027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01471306,"about_ca_topic_score_gemma":0.0140102,"domain_scores_codex":[0.9996054,0.00005742648,0.00004159772,0.000125033,0.0000566441,0.0001139834],"domain_scores_gemma":[0.9995306,0.0001116373,0.0001444571,0.00003748242,0.00007450284,0.0001015052],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002428228,0.00008164336,0.9761859,0.00006527845,0.00008447393,0.001553434,0.003411279,0.000143002,0.01343685,0.00004910513,0.0001650617,0.004581211],"study_design_scores_gemma":[0.00000214854,0.00007962876,0.9970167,0.000005837151,0.00002166224,0.0008323857,0.001542609,0.00009372643,0.0002430884,0.000006867732,0.0001488906,0.000006434813],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999612,0.0000488291,0.00003037282,0.00001453838,0.000001721782,0.000004128398,0.0001602901,0.000001802843,0.0001262758],"genre_scores_gemma":[0.9992808,0.00009067801,0.00008936222,0.00002298731,0.000004096019,0.000005995906,0.0003756176,0.000002115572,0.0001285535],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01471306,"threshold_uncertainty_score":0.02925479,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01229575210860993,"score_gpt":0.2637797367016126,"score_spread":0.2514839845930027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}