{"id":"W3123093675","doi":"10.3390/jof7020081","title":"Colonisation and Transmission Dynamics of Candida auris among Chronic Respiratory Diseases Patients Hospitalised in a Chest Hospital, Delhi, India: A Comparative Analysis of Whole Genome Sequencing and Microsatellite Typing","year":2021,"lang":"en","type":"article","venue":"Journal of Fungi","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"University Grants Commission","keywords":"Candida auris; Genotyping; Typing; Microsatellite; Whole genome sequencing; Biology; Multilocus sequence typing; Transmission (telecommunications); Genotype; Microbiology; Medicine; Genome; Genetics; Gene; Allele","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002178061,0.0001068897,0.0006306385,0.0002753653,0.00003713911,0.0000133498,0.00003838014,0.00007412134,0.00001314461],"category_scores_gemma":[0.00006095457,0.00009291011,0.0001297041,0.000508453,0.000140054,0.0001666477,0.00001684541,0.0001576258,5.938282e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003828009,"about_ca_system_score_gemma":0.0004016795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005406566,"about_ca_topic_score_gemma":0.0003688578,"domain_scores_codex":[0.9988413,0.00005892144,0.0006144225,0.0001540055,0.0002086552,0.0001226935],"domain_scores_gemma":[0.9988373,0.00008102586,0.0004891702,0.0001073701,0.000367571,0.0001175778],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002689638,0.0001821826,0.9648046,0.0003171436,0.0003469154,0.00003737853,0.003185746,0.0001262098,0.02899596,0.000003563749,0.000003524484,0.001727731],"study_design_scores_gemma":[0.001356814,0.0006539043,0.9915367,0.0004835723,0.0007881258,0.000001464125,0.001308735,0.0017724,0.001974115,0.00001060077,0.00003390809,0.00007964505],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854146,0.014098,0.0001684873,0.00004344243,0.00001949603,0.0001620454,0.00007855736,0.000001775207,0.00001364702],"genre_scores_gemma":[0.9987172,0.000928259,0.0002538189,0.00001977548,0.00001457305,0.00000112539,0.00005025212,0.0000056925,0.000009238196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02702185,"threshold_uncertainty_score":0.3788764,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01229575210860993,"score_gpt":0.2637797367016126,"score_spread":0.2514839845930027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}