{"id":"W3123236804","doi":"10.3390/v13020193","title":"Investigating the Diversity and Host Range of Novel Parvoviruses from North American Ducks Using Epidemiology, Phylogenetics, Genome Structure, and Codon Usage Analysis","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Environment and Climate Change Canada; University of Guelph; Memorial University of Newfoundland","funders":"Ocean Frontier Institute","keywords":"Biology; Subfamily; Clade; Phylogenetic tree; Parvoviridae; Phylogenetics; Genome; Host (biology); Genetics; Evolutionary biology; Zoology; Virology; Parvovirus; Virus; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001422425,0.0001355579,0.0003742836,0.00001910329,0.001025313,0.00001881866,0.0001131098,0.00003753556,0.00002888765],"category_scores_gemma":[0.0004268012,0.00005487841,0.00006682635,0.0006826242,0.0009177822,0.00005852925,0.0007628677,0.00009538648,3.587643e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001226536,"about_ca_system_score_gemma":0.000005859471,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.02020171,"about_ca_topic_score_gemma":0.04283499,"domain_scores_codex":[0.9990337,0.0001848283,0.0002146638,0.0003043917,0.00008925165,0.0001730964],"domain_scores_gemma":[0.998579,0.00098768,0.0002293679,0.00007173354,0.00007209944,0.00006008549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00000463205,0.0000163171,0.8673872,0.000002340048,0.0002235442,5.427118e-7,0.0002186461,0.00004623898,0.1314753,0.00001405558,0.000002499244,0.0006087106],"study_design_scores_gemma":[0.00006184614,0.00004837014,0.9962159,0.000003872516,0.0003316157,0.000001544522,0.0006623546,0.00009732109,0.002288671,0.00005375937,0.0001218926,0.0001128708],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970322,0.00180453,0.0000309169,0.00009193632,0.00002401154,0.00006905213,0.000923409,0.00001529709,0.000008686095],"genre_scores_gemma":[0.9975684,0.0006462562,0.000996419,0.0006942049,0.00008047515,0.000001156447,0.00001043696,9.742128e-7,0.000001643718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1291866,"threshold_uncertainty_score":0.9863228,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1311573850755829,"score_gpt":0.2851396295032885,"score_spread":0.1539822444277056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}