{"id":"W3123552445","doi":"10.1089/aid.2020.0271","title":"Simian Immunodeficiency Virus Susceptibility, Immunology, and Microbiome in the Female Genital Tract of Adolescent Versus Adult Pigtail Macaques","year":2021,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Immunology; Microbiome; Immune system; Biology; Population; Sex organ; Epidemiology; Genital tract; Human immunodeficiency virus (HIV); Female circumcision; Physiology; Medicine; Internal medicine; Gynecology; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001914711,0.0002252797,0.0003898171,0.000601603,0.0006887076,0.000112229,0.0004667635,0.0002613484,0.000383583],"category_scores_gemma":[0.001115463,0.0001768435,0.00009393698,0.0007744462,0.003886558,0.0002443792,0.0004682725,0.001486011,0.00007143456],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001274723,"about_ca_system_score_gemma":0.0002214634,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003105758,"about_ca_topic_score_gemma":0.001748685,"domain_scores_codex":[0.996226,0.001522099,0.0004741538,0.0007223373,0.0001984396,0.0008569728],"domain_scores_gemma":[0.9974979,0.0008525217,0.00008151883,0.0008254425,0.0007016672,0.00004100497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005437316,0.001393628,0.1566151,0.00009283855,0.0001150675,0.00003875007,0.001323902,2.188883e-7,0.8331172,0.00454883,0.0001739133,0.00203676],"study_design_scores_gemma":[0.002476927,0.003772272,0.6481194,0.00007076965,0.00002197547,0.000187817,0.01042729,1.500596e-7,0.3317648,0.0008102737,0.002110793,0.0002374146],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861537,0.01183853,0.000003065282,0.0001893729,0.0001288213,0.000458676,0.00008286801,0.00002493438,0.001119992],"genre_scores_gemma":[0.9972434,0.001969194,0.00003402753,0.00002761161,0.00003436744,0.00004343187,0.00005960844,0.00002069913,0.0005676542],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5013524,"threshold_uncertainty_score":0.9988243,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08425169355871438,"score_gpt":0.3772522343872904,"score_spread":0.293000540828576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}