{"id":"W3123662272","doi":"10.1038/s41564-021-00864-5","title":"Emergence of invasive Salmonella in Africa","year":2021,"lang":"en","type":"letter","venue":"Nature Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"","keywords":"Salmonella; Lineage (genetic); Biology; Evolutionary biology; Microbiology; Genetics; Computational biology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00191438,0.0004576936,0.0004717143,0.0005688147,0.002115511,0.001850948,0.0007674372,0.0200612,0.003598558],"category_scores_gemma":[0.005900761,0.000478202,0.0005414165,0.0005029109,0.00143495,0.001952651,0.001122353,0.011686,0.001364763],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002514114,"about_ca_system_score_gemma":0.002330611,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01989549,"about_ca_topic_score_gemma":0.03040299,"domain_scores_codex":[0.9990581,0.0002469572,0.00008974237,0.0001247142,0.0001767979,0.0003037133],"domain_scores_gemma":[0.9966233,0.001230857,0.0004268545,0.0001100488,0.0007569861,0.0008519388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0005929632,0.0001658131,0.02816356,0.0004205625,0.0000614572,0.0217297,0.001742588,0.0002410796,0.002653335,0.003591464,0.8814538,0.05918361],"study_design_scores_gemma":[0.0002864394,0.0003441387,0.0424065,0.0008341727,0.00008922144,0.009476864,0.003679957,0.0008931163,0.0007247467,0.004623211,0.9365553,0.00008630731],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"empirical","genre_scores_codex":[0.01566654,0.006134151,0.000266836,0.9491568,0.01880296,0.00002855261,0.0001301033,0.00003279594,0.009781245],"genre_scores_gemma":[0.08771822,0.006415262,0.0004563735,0.8373707,0.05066421,0.00005188984,0.000110006,0.00004617203,0.01716711],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0200612,"threshold_uncertainty_score":0.03955936,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02326226791663955,"score_gpt":0.2249824595420667,"score_spread":0.2017201916254272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}