{"id":"W3123662272","doi":"10.1038/s41564-021-00864-5","title":"Emergence of invasive Salmonella in Africa","year":2021,"lang":"en","type":"letter","venue":"Nature Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"","keywords":"Salmonella; Lineage (genetic); Biology; Evolutionary biology; Microbiology; Genetics; Computational biology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0003118925,0.0004040383,0.001086347,0.00005921252,0.00004116619,0.000008178523,0.0007583202,0.004998268,0.002159195],"category_scores_gemma":[0.0003536832,0.0001703198,0.0003120842,0.0005957252,0.0002088744,0.00002638978,0.0002439247,0.003390281,0.00005024653],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002586157,"about_ca_system_score_gemma":0.00005183286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001601129,"about_ca_topic_score_gemma":0.0008856219,"domain_scores_codex":[0.9969101,0.0007368933,0.0006749473,0.0008563714,0.00007960326,0.0007420985],"domain_scores_gemma":[0.9978393,0.001372558,0.0004036356,0.0001789592,0.0001639079,0.00004169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001125639,0.00002511757,0.002124619,0.00002810324,0.00002822174,0.0001988402,0.00002949347,2.947636e-7,0.4136514,0.00001145533,0.5832639,0.000627351],"study_design_scores_gemma":[0.0001250524,0.0001696739,0.004541015,0.0001056383,0.00002755553,0.0001703835,0.0001117653,3.810026e-7,0.01009045,0.0004806019,0.9837442,0.0004332637],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.517662,0.02880214,6.687774e-7,0.4438998,0.002788572,0.000559479,0.001060698,0.00006981311,0.005156798],"genre_scores_gemma":[0.388044,0.002300235,0.0002133526,0.593703,0.004486583,0.00005544795,0.008634865,0.00001010314,0.002552458],"genre_candidate":"commentary","genre_consensus":null,"teacher_disagreement_score":0.4035609,"threshold_uncertainty_score":0.9989089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02326226791663955,"score_gpt":0.2249824595420667,"score_spread":0.2017201916254272,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}