{"id":"W3123707192","doi":"10.1128/mra.01320-20","title":"Genome Sequences of 104 Escherichia coli O157:H7 Isolates from Pigs, Cattle, and Pork Production Environments in Alberta, Canada","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Alberta Ministry of Agriculture and Forestry; Agriculture and Agri-Food Canada","funders":"Alberta Innovates Bio Solutions; Alberta Agriculture and Forestry","keywords":"Escherichia coli; Feces; Biology; Genome; Microbiology; Veterinary medicine; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000145973,0.0002018195,0.0002765074,0.00003168186,0.00009616715,0.00001071712,0.0001835875,0.0001441758,0.00003461644],"category_scores_gemma":[0.0001374398,0.0002014916,0.00003250777,0.0001334279,0.0002697663,0.000005770001,0.0003420536,0.0001448513,0.000003245794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008210428,"about_ca_system_score_gemma":0.000307591,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.08064269,"about_ca_topic_score_gemma":0.2739648,"domain_scores_codex":[0.9984627,0.0001890512,0.0003063985,0.0005874375,0.00008208449,0.0003723731],"domain_scores_gemma":[0.9994116,0.00003187711,0.0001288588,0.0003138329,0.00005327221,0.00006055564],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007101188,0.00008130169,0.08377398,0.00001800143,0.0001488107,0.000006781704,0.0001719366,0.00006679598,0.9147343,9.136453e-7,0.0008653735,0.00006080171],"study_design_scores_gemma":[0.0009969953,0.0002813045,0.05781841,0.00005386354,0.00003852711,0.00001863724,0.001160036,0.00000617265,0.3078133,0.00001583899,0.631364,0.0004328013],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934295,0.005093014,0.00000670778,0.0005450425,0.00008560628,0.0002046988,0.0004433503,0.000002325156,0.0001897943],"genre_scores_gemma":[0.9929743,0.0009663304,0.0002451719,0.0003442751,0.00008163413,0.00003719766,0.002892666,0.00001755065,0.002440842],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6304987,"threshold_uncertainty_score":0.9254794,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007021977278730067,"score_gpt":0.2121971474903633,"score_spread":0.2051751702116332,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}