{"id":"W3123707192","doi":"10.1128/mra.01320-20","title":"Genome Sequences of 104 Escherichia coli O157:H7 Isolates from Pigs, Cattle, and Pork Production Environments in Alberta, Canada","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Lethbridge; Alberta Ministry of Agriculture and Forestry; Agriculture and Agri-Food Canada","funders":"Alberta Innovates Bio Solutions; Alberta Agriculture and Forestry","keywords":"Escherichia coli; Feces; Biology; Genome; Microbiology; Veterinary medicine; Genetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003290836,0.0004349778,0.0003728468,0.002904305,0.001652789,0.0008812526,0.0005073845,0.0002630883,0.002629835],"category_scores_gemma":[0.0004888137,0.000242885,0.0003078458,0.007129079,0.0003391721,0.0001290702,0.0003678483,0.0004096604,0.0004614941],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007740104,"about_ca_system_score_gemma":0.0132495,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9536624,"about_ca_topic_score_gemma":0.9798378,"domain_scores_codex":[0.999675,0.00001218305,0.00001397297,0.00005427653,0.0001534185,0.0000912173],"domain_scores_gemma":[0.9994454,0.00004021329,0.00005245758,0.00001360971,0.0003223247,0.0001261082],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002676731,0.0003075813,0.6046901,0.001547022,0.0002998817,0.002323869,0.005496214,0.005197088,0.1907246,0.001067469,0.03226804,0.1534014],"study_design_scores_gemma":[0.00002855114,0.00006871005,0.9742972,0.00007791841,0.00007859607,0.0001964588,0.002231585,0.0005372085,0.002086602,0.00005266223,0.02032471,0.00001974167],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8378942,0.002419248,0.001482189,0.0003756705,0.00004528474,0.0001958695,0.1463512,0.0001525689,0.01108383],"genre_scores_gemma":[0.6728313,0.003975971,0.009616997,0.0003521133,0.00001954179,0.00009578712,0.3018397,0.00006657977,0.01120196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0463376,"threshold_uncertainty_score":0.09322095,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007021977278730067,"score_gpt":0.2121971474903633,"score_spread":0.2051751702116332,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}