{"id":"W3123925201","doi":"10.20944/preprints201906.0125.v1","title":"A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples","year":2019,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Danish Agency for Science and Higher Education; Canadian Institutes of Health Research; Institut National de la Recherche Agronomique","keywords":"Metagenomics; Human virome; Biology; Microbiome; Genome; Computational biology; Isolation (microbiology); DNA extraction; DNA sequencing; Genetics; DNA; Microbiology; Polymerase chain reaction; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002596847,0.003282872,0.001920841,0.003223796,0.00201343,0.001250826,0.001707893,0.002220123,0.01618901],"category_scores_gemma":[0.004167342,0.002125733,0.002133672,0.002425444,0.001016637,0.0008351611,0.001643375,0.004329535,0.02482479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004643188,"about_ca_system_score_gemma":0.001947615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009076362,"about_ca_topic_score_gemma":0.002860131,"domain_scores_codex":[0.9966651,0.0006679948,0.0005244004,0.001019607,0.000748184,0.0003747463],"domain_scores_gemma":[0.9980379,0.0005456631,0.0001738013,0.0006381258,0.0004558114,0.00014868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003615159,0.0002970362,0.001113715,0.001458769,0.000120907,0.0008352115,0.0004477715,0.0007437773,0.9545615,0.001391153,0.007652726,0.0310159],"study_design_scores_gemma":[0.000355272,0.001763485,0.01312452,0.0006867037,0.0003307832,0.001902533,0.0002181761,0.005138691,0.5859343,0.004067077,0.3861635,0.0003149836],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.02935311,0.002310879,0.8891,0.0005336538,0.0009825837,0.02182156,0.0338616,0.01130035,0.01073626],"genre_scores_gemma":[0.02809047,0.002177568,0.8661737,0.000824459,0.0002514376,0.04322562,0.04340645,0.002563634,0.01328672],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.01618901,"threshold_uncertainty_score":0.05415761,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1508699044704078,"score_gpt":0.3800076188866718,"score_spread":0.229137714416264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}