{"id":"W3123946977","doi":"10.1093/gbe/evaa267","title":"Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus <i>Claviceps</i> Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range Expansion","year":2021,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Plant and fungal interactions","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Smithsonian Tropical Research Institute; National Institute of Food and Agriculture; Agriculture and Agri-Food Canada; Smithsonian Institution; Joint Genome Institute; Colorado State University; Akademie Věd České Republiky; American Malting Barley Association; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Biology; Genome; Host (biology); Divergence (linguistics); Genus; Range (aeronautics); Evolutionary biology; Genome size; Genetics; Zoology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006607047,0.0001568537,0.0002867531,0.00002579123,0.0007297064,0.00001935038,0.0001950626,0.0001507215,0.00001728135],"category_scores_gemma":[0.0001000616,0.00005920679,0.00007094762,0.0003429931,0.0004628423,0.0001250344,0.0002144428,0.0002017753,0.000001815126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004970264,"about_ca_system_score_gemma":0.00002069515,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004326457,"about_ca_topic_score_gemma":0.001086742,"domain_scores_codex":[0.998579,0.0003541237,0.0004223158,0.0002975126,0.0001301429,0.0002169353],"domain_scores_gemma":[0.9987612,0.0004115153,0.0004619313,0.0001292317,0.0001913218,0.00004477165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000687669,0.00004006066,0.07572983,0.00002048522,0.00003830745,5.026449e-7,0.000445883,0.00003164787,0.9186938,0.004858268,0.00001636125,0.00005611784],"study_design_scores_gemma":[0.0001589711,0.0001672902,0.9905588,0.00005101803,0.00007877819,0.00004129205,0.004567379,0.0001968195,0.001755622,0.001845334,0.0004636345,0.0001150336],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9825777,0.01453166,0.0008034697,0.0009769615,0.0001898793,0.0002639061,0.0005749064,0.00001270769,0.00006882232],"genre_scores_gemma":[0.9985957,0.0009847771,0.00008108579,0.00003484583,0.0001119167,0.00001224326,0.00008225891,0.000001509373,0.00009571579],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9169381,"threshold_uncertainty_score":0.5612385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02451684348229481,"score_gpt":0.224302290743056,"score_spread":0.1997854472607612,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}