{"id":"W3124182878","doi":"10.1101/2021.01.27.21250648","title":"Sequencing Data of North American SARS-CoV-2 Isolates Shows Widespread Complex Variants","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of North Carolina at Charlotte","keywords":"GenBank; Dashboard; Pandemic; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Visualization; Geography; Workflow; Biology; Coronavirus disease 2019 (COVID-19); Genetics; Computer science; Data mining; Data science; Database; Medicine; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002728225,0.0002163045,0.0001598484,0.0006468382,0.0004787053,0.0003733731,0.0001217883,0.0001835742,0.002626659],"category_scores_gemma":[0.0006750929,0.00008463008,0.0001959594,0.001983828,0.0001371719,0.0001635907,0.0002162653,0.0002380398,0.0007103217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002312816,"about_ca_system_score_gemma":0.00045615,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03091809,"about_ca_topic_score_gemma":0.08163636,"domain_scores_codex":[0.9998087,0.00002167568,0.00001962085,0.00006445548,0.00006377925,0.00002176654],"domain_scores_gemma":[0.9993985,0.0001112116,0.0001307391,0.00006363707,0.0002094468,0.00008652157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001466705,0.000277261,0.7872417,0.0004574417,0.0001944999,0.001556125,0.003013971,0.00364936,0.09414205,0.0005489302,0.03066437,0.07678768],"study_design_scores_gemma":[0.00002218613,0.00009807623,0.9509276,0.00003668411,0.00005236836,0.0005193331,0.001299758,0.002859302,0.008579447,0.0001949726,0.03537707,0.00003322063],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9587725,0.0001793634,0.000993548,0.0001727056,0.00002166692,0.00002809545,0.03631349,0.0002507303,0.00326793],"genre_scores_gemma":[0.8801376,0.0003749321,0.007470264,0.0001414853,0.00001803356,0.00005655583,0.1089939,0.00009478603,0.002712509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03091809,"threshold_uncertainty_score":0.06147623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1834732024805417,"score_gpt":0.3939016034071622,"score_spread":0.2104284009266205,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}