{"id":"W3124384599","doi":"10.20944/preprints201703.0216.v1","title":"A Dysbiotic Mycobiome Dominated by <em>Candida albicans</em> is Identified within Oral Squamous Cell Carcinomas","year":2017,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"University of Peradeniya","keywords":"Biology; Malassezia; Microbiology; Alternaria; Ascomycota; Candida albicans; Basidiomycota; Botany; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"category_scores_codex":[0.002607767,0.001461795,0.002550655,0.0004539984,0.0005915179,0.0002586603,0.001988607,0.001679824,0.00453592],"category_scores_gemma":[0.001507159,0.001412513,0.001069059,0.0003577376,0.0008070004,0.0002833167,0.002652118,0.002725836,0.003476009],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009925738,"about_ca_system_score_gemma":0.001290668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001604469,"about_ca_topic_score_gemma":0.00128477,"domain_scores_codex":[0.9906653,0.0004627871,0.001975848,0.003641501,0.001774366,0.001480166],"domain_scores_gemma":[0.9897786,0.0002199871,0.001571246,0.006519348,0.0009008781,0.001009874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002586012,0.001525296,0.6207715,0.003470914,0.0006165046,0.0007267342,0.006652307,0.00001712514,0.3554564,0.00005756818,0.00762922,0.0004904582],"study_design_scores_gemma":[0.005839078,0.0002704374,0.7496385,0.001057507,0.001614105,0.00006404449,0.0007086243,0.0004608434,0.2302724,0.001049732,0.007028935,0.001995728],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9787558,0.001551522,0.0001160342,0.0005577322,0.001975151,0.002915943,0.0005412256,0.0004244693,0.01316212],"genre_scores_gemma":[0.9347282,0.0002196988,0.0001883667,0.0004460009,0.0003399737,0.0001862695,0.0006985383,0.0002154469,0.06297751],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.128867,"threshold_uncertainty_score":0.9998131,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05537154199914411,"score_gpt":0.321303396440677,"score_spread":0.2659318544415328,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}