{"id":"W3125454537","doi":"10.1139/gen-2020-0176","title":"Comparative genomics of the <i>Pasteurella multocida</i> toxin","year":2021,"lang":"en","type":"article","venue":"Genome","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Prophage; Pasteurella multocida; Biology; Microbiology; Genome; Operon; Genetics; Typing; Genotype; Phylogenetic tree; Bacteria; Gene; Escherichia coli; Bacteriophage","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009282981,0.000307422,0.0003097842,0.0004353769,0.0002272736,0.0003781767,0.0002161202,0.0002903194,0.0005743954],"category_scores_gemma":[0.0001939152,0.0001115052,0.0004680465,0.0007411618,0.0001191703,0.0002383689,0.0002362387,0.0004247228,0.0003866618],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003640122,"about_ca_system_score_gemma":0.0002175212,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002217385,"about_ca_topic_score_gemma":0.001246815,"domain_scores_codex":[0.9999163,0.000009285576,0.000005465819,0.00002463954,0.00002178105,0.00002249098],"domain_scores_gemma":[0.9998556,0.00002619286,0.00004195767,0.000009716541,0.0000271335,0.00003934003],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002833245,0.00002673902,0.0009937081,0.00008757209,0.00001287366,0.0001264143,0.00008883907,0.0001876157,0.9951433,0.00008548387,0.00008463408,0.002879527],"study_design_scores_gemma":[0.00005582972,0.001513093,0.5904268,0.00009063476,0.0002929665,0.002481088,0.00073885,0.007752499,0.3741397,0.0005685323,0.02187392,0.00006613108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923372,0.001226045,0.001991913,0.0001018221,0.00001908107,0.00002451451,0.002957084,0.0000608429,0.001281512],"genre_scores_gemma":[0.9724473,0.001246428,0.00613657,0.0001400117,0.00003720353,0.00004762,0.01718378,0.00008353426,0.002677556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002217385,"threshold_uncertainty_score":0.004409015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02500060672331607,"score_gpt":0.2723343506648799,"score_spread":0.2473337439415638,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}