{"id":"W3125995565","doi":"10.1093/dnares/dsaa029","title":"<i>De novo</i> genome assembly of two tomato ancestors, <i>Solanum pimpinellifolium</i> and <i>Solanum</i> <i>  lycopersicum</i> var. <i>cerasiforme</i>, by long-read sequencing","year":2020,"lang":"en","type":"article","venue":"DNA Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Bio-oriented Technology Research Advancement Institution; Japan Society for the Promotion of Science; University of California, Davis","keywords":"Biology; Genome; Contig; Sequence assembly; Solanum; Genetics; Gene; Transcriptome; Reference genome; Whole genome sequencing; Chromosome; Botany; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002296225,0.0007282187,0.0004184812,0.0006537732,0.0003705445,0.0005223662,0.0004337824,0.0003481263,0.001551871],"category_scores_gemma":[0.0006158081,0.0003769662,0.001037443,0.0006708027,0.0001255349,0.0004107618,0.0004159533,0.0007001868,0.001062847],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005094366,"about_ca_system_score_gemma":0.0007479281,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00330349,"about_ca_topic_score_gemma":0.006683718,"domain_scores_codex":[0.9998788,0.00001269589,0.00001160709,0.00005297492,0.00002628934,0.00001766945],"domain_scores_gemma":[0.9997473,0.00003897914,0.00006157724,0.00003631724,0.00008295952,0.00003276968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002713342,0.0000459485,0.003637964,0.0004696922,0.00008713856,0.0004990877,0.0003181571,0.00193348,0.9756881,0.0004676168,0.001157475,0.01542395],"study_design_scores_gemma":[0.0001468885,0.0006594114,0.1630951,0.0002001746,0.0007651732,0.001749692,0.0006247351,0.05152706,0.6767471,0.001416941,0.1028899,0.000177721],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8521189,0.001327995,0.09785386,0.000327085,0.0001385899,0.0004448836,0.03919986,0.002719219,0.005869583],"genre_scores_gemma":[0.561875,0.001640624,0.2380818,0.0002357655,0.0000546872,0.000621119,0.1894612,0.001234472,0.006795339],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00330349,"threshold_uncertainty_score":0.006568551,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04559525211993846,"score_gpt":0.3138022664930277,"score_spread":0.2682070143730892,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}