{"id":"W3126308011","doi":"10.1093/hmg/ddab017","title":"Transethnic analysis of the human leukocyte antigen region for ulcerative colitis reveals not only shared but also ethnicity-specific disease associations","year":2021,"lang":"en","type":"article","venue":"Human Molecular Genetics","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"FP7 People: Marie-Curie Actions; National Institutes of Health; Universitair Medisch Centrum Groningen; National Institute of Diabetes and Digestive and Kidney Diseases; Tehran University of Medical Sciences and Health Services; National Research Foundation of Korea; Korea Health Industry Development Institute; National Research Foundation; Exzellenzclusters Entzündungsforschung; Crohn's and Colitis Foundation; Ministry of Education, Culture, Sports, Science and Technology; Deutsche Forschungsgemeinschaft; European Commission; California Department of Fish and Game","keywords":"Human leukocyte antigen; Allele; Biology; Linkage disequilibrium; Ulcerative colitis; Immunology; Haplotype; Locus (genetics); Genetics; Inflammatory bowel disease; Disease; Allele frequency; Genetic association; Population; Antigen; Gene; Genotype; Medicine; Single-nucleotide polymorphism; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002501984,0.0001893376,0.0001786467,0.0002941969,0.0002133045,0.0002488863,0.0000971961,0.0001321613,0.001297192],"category_scores_gemma":[0.0004854903,0.00006453064,0.0002816396,0.0004175056,0.0001208009,0.00007956922,0.0003087746,0.0002347778,0.0001924035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006320304,"about_ca_system_score_gemma":0.00006981828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001240732,"about_ca_topic_score_gemma":0.002312349,"domain_scores_codex":[0.9998579,0.00005185136,0.00001000071,0.00004510977,0.00001880445,0.00001631096],"domain_scores_gemma":[0.9997081,0.00007088504,0.0001024906,0.00005280837,0.00002257512,0.00004314288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006662878,0.0000510313,0.7796856,0.00005892619,0.0005235601,0.0003737233,0.0003977937,0.0006498665,0.2005078,0.0001938073,0.0001388376,0.01675269],"study_design_scores_gemma":[0.000005467588,0.0001242006,0.9919055,0.000006668307,0.0001420747,0.0008924683,0.000191302,0.001513868,0.004384182,0.00008156172,0.000746658,0.000006063056],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994642,0.0001026609,0.0002521825,0.000006297222,0.000001020362,0.000001212206,0.00004849607,0.000002521265,0.00012129],"genre_scores_gemma":[0.9994388,0.00004618103,0.0002705411,0.000005413606,0.000001229227,0.000001595422,0.0001325866,0.000002523084,0.000101073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001297192,"threshold_uncertainty_score":0.004339576,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03966704483210168,"score_gpt":0.2837839836377156,"score_spread":0.2441169388056139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}