{"id":"W3126394916","doi":"10.1093/sysbio/syab001","title":"Long Branch Attraction Biases in Phylogenetics","year":2021,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Attraction; Biology; Phylogenetics; Evolutionary biology; Zoology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002608251,0.0001503171,0.0003318699,0.00004596574,0.00004655198,0.00001481384,0.0001190398,0.000183058,0.00001169506],"category_scores_gemma":[0.000347984,0.0001357468,0.00008637164,0.0001073499,0.00005980318,3.977338e-7,0.0001420971,0.00006771172,0.00001363908],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001551023,"about_ca_system_score_gemma":0.00007481939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001704967,"about_ca_topic_score_gemma":0.0003312499,"domain_scores_codex":[0.9986867,0.0002489267,0.000394201,0.0003508189,0.00005035945,0.0002689612],"domain_scores_gemma":[0.9993095,0.00006086337,0.0001134009,0.0003744146,0.00009759878,0.00004415756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000115445,0.00006608104,0.1509057,0.001473441,0.00009358762,0.000009224073,0.0000708882,0.0003291639,0.8466492,0.0001779387,0.00002465798,0.000188547],"study_design_scores_gemma":[0.001979949,0.0004702111,0.3914095,0.001663112,0.0001454842,0.0004401871,0.0008537596,0.0004631369,0.5983416,0.002658083,0.0005911397,0.0009838124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875563,0.01031747,0.0009814996,0.00009516402,0.0003750107,0.0002800897,0.00001213954,0.000003797069,0.0003785737],"genre_scores_gemma":[0.998749,0.0003381612,0.000382304,0.0001644089,0.0001338656,0.00006928751,0.00004541098,0.00001394332,0.0001036551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2483076,"threshold_uncertainty_score":0.5535595,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02812859695941371,"score_gpt":0.2786318828237367,"score_spread":0.250503285864323,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}