{"id":"W3126548931","doi":"10.1101/2021.02.05.430022","title":"Impact of cobas PCR Media Freezing on SARS-CoV-2 Viral RNA Integrity and Whole Genome Sequencing Analyses","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Centre Hospitalier de l’Université de Montréal; Université de Montréal","funders":"","keywords":"Minion; Nanopore sequencing; DNA sequencing; Biology; Whole genome sequencing; RNA; Genome; Computational biology; Genetics; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00564266,0.001580579,0.0009755647,0.000898699,0.001084279,0.002016389,0.001176753,0.0009333516,0.003218658],"category_scores_gemma":[0.01076518,0.0007133553,0.0008026073,0.0006848762,0.001116183,0.0007977655,0.001194684,0.001084886,0.002069084],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00071804,"about_ca_system_score_gemma":0.0008186326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003291027,"about_ca_topic_score_gemma":0.003907343,"domain_scores_codex":[0.9896171,0.003452044,0.001057455,0.00219655,0.002940585,0.0007362472],"domain_scores_gemma":[0.9904641,0.004299184,0.001440441,0.000859563,0.002625696,0.0003110212],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001404252,0.0001912567,0.006386648,0.0004992744,0.00007844991,0.0002838187,0.0008011405,0.0009926033,0.9738181,0.000293993,0.001208225,0.01404239],"study_design_scores_gemma":[0.00001462537,0.0005618943,0.01147753,0.0002023188,0.0001667571,0.0003817226,0.0003699159,0.003686616,0.9759233,0.0002069431,0.006945048,0.00006338635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8569657,0.007288762,0.1139965,0.001608134,0.001575865,0.001174882,0.004114647,0.002725596,0.01054988],"genre_scores_gemma":[0.8169707,0.004247654,0.1541168,0.001399466,0.0002595173,0.002092099,0.01025429,0.002076878,0.008582526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00564266,"threshold_uncertainty_score":0.02984166,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08436086825997179,"score_gpt":0.3258003242349147,"score_spread":0.2414394559749429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}