{"id":"W3126766669","doi":"10.1053/j.gastro.2021.01.220","title":"Genomic Features and Classification of Homologous Recombination Deficient Pancreatic Ductal Adenocarcinoma","year":2021,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":false,"ca_institutions":"Pancreas Centre (Canada); Canada's Michael Smith Genome Sciences Centre; McGill University Health Centre; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Occupational Cancer Research Centre; Princess Margaret Cancer Centre; University of Toronto; University Health Network; Ontario Institute for Cancer Research","funders":"Terry Fox Research Institute; Ontario Institute for Cancer Research; Canadian Cancer Society; Pancreatic Cancer Canada Foundation; Princess Margaret Cancer Foundation; Canadian Friends of Tel Aviv University","keywords":"Pancreatic ductal adenocarcinoma; Homologous recombination; Homologous chromosome; Genetics; Cancer research; Biology; Gene; Molecular biology; Pancreatic cancer; Cancer","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002045533,0.00009775654,0.0004223146,0.0001209623,0.00004766804,0.000005409701,0.00005227825,0.0001107297,0.000111248],"category_scores_gemma":[0.0001590344,0.00008940753,0.00005174467,0.00008269781,0.0002402792,0.00002376508,0.00006532711,0.0001743649,0.0000124228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007214289,"about_ca_system_score_gemma":0.0001136431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001959477,"about_ca_topic_score_gemma":0.00003625445,"domain_scores_codex":[0.9989012,0.0001813947,0.0002638096,0.0002703846,0.0001240178,0.0002592088],"domain_scores_gemma":[0.999327,0.00008351354,0.0001000676,0.0002340416,0.0001635102,0.0000918572],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004410593,0.0002089945,0.9479687,0.00006990897,0.0001073407,0.0001117934,0.0001797235,5.5687e-7,0.04952348,0.0005602557,0.0004438941,0.0003842702],"study_design_scores_gemma":[0.001685712,0.001285008,0.9913111,0.00002210657,0.0002150495,0.00411184,0.0002542363,0.0002319213,0.0005564177,0.0002697346,0.00002195163,0.00003495028],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950327,0.00116401,0.0003454852,0.002128108,0.00009138515,0.000210356,0.000007457144,0.00001594011,0.001004546],"genre_scores_gemma":[0.9968713,0.0002833912,0.001886245,0.0002262048,0.00003729078,0.00002665721,0.0000693286,0.00001014764,0.0005894398],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04896707,"threshold_uncertainty_score":0.3645933,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02423761618775169,"score_gpt":0.2923113778412194,"score_spread":0.2680737616534676,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}