{"id":"W3126833941","doi":"10.1111/mec.15838","title":"Evolution, inactivation and loss of short wavelength‐sensitive opsin genes during the diversification of Neotropical cichlids","year":2021,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; American Society of Ichthyologists and Herpetologists; University of Michigan; National Geographic Society","keywords":"Cichlid; Biology; Opsin; Adaptive radiation; Evolutionary biology; Adaptation (eye); Ecology; Zoology; Gene; Phylogenetics; Genetics; Rhodopsin; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003037564,0.0002291894,0.0001871764,0.0007203034,0.0004893295,0.0004212511,0.0003829041,0.0003819263,0.0003985661],"category_scores_gemma":[0.0005118842,0.0002117569,0.0001948549,0.0004339991,0.0006269185,0.0002248857,0.0006669677,0.0004360323,0.0001336771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006985964,"about_ca_system_score_gemma":0.000412965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007516163,"about_ca_topic_score_gemma":0.01266344,"domain_scores_codex":[0.9998952,0.000009235826,0.000008327195,0.0000403315,0.0000249954,0.00002181672],"domain_scores_gemma":[0.999712,0.00005431691,0.00008965779,0.00003258836,0.00006293185,0.00004849917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005022439,0.00004959021,0.3014022,0.00009140235,0.00009330757,0.0008306457,0.001895675,0.001000584,0.6784,0.0002443606,0.0001296432,0.01536039],"study_design_scores_gemma":[0.000005302533,0.00002492096,0.9965979,0.000005290556,0.00001273882,0.0001812921,0.0002316923,0.0002916281,0.002213285,0.00002660323,0.0004031186,0.000006225672],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995894,0.0001004069,0.00003993237,0.000007253662,8.280415e-7,0.000002115168,0.00002539118,0.000001909066,0.0002328125],"genre_scores_gemma":[0.9991767,0.0001802849,0.000160265,0.00003700484,0.000002218616,0.000009749733,0.000116325,0.000005431902,0.000311958],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007516163,"threshold_uncertainty_score":0.01494485,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008048352457160913,"score_gpt":0.2176267556436018,"score_spread":0.2095784031864409,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}