{"id":"W3126881489","doi":"10.1371/journal.ppat.1009291","title":"Capsule carbohydrate structure determines virulence in Acinetobacter baumannii","year":2021,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"Virulence; Acinetobacter baumannii; Microbiology; Biology; Phagocytosis; Gene; Bacterial capsule; Pathogen; In vivo; Transposable element; Mutant; Bacteria; Genetics; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001287697,0.0002620694,0.0001421483,0.0002291525,0.0001212772,0.0002721811,0.0001390086,0.0001956389,0.000504196],"category_scores_gemma":[0.0002582407,0.0001364968,0.0001437085,0.0002397788,0.0002084225,0.0001379549,0.0002176235,0.0003372425,0.0001685457],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002991981,"about_ca_system_score_gemma":0.0002154172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001363303,"about_ca_topic_score_gemma":0.001244447,"domain_scores_codex":[0.9998595,0.00002944356,0.00001223038,0.00001990813,0.00004637333,0.00003258934],"domain_scores_gemma":[0.9998301,0.0000282291,0.00006508692,0.00001899008,0.00002090081,0.00003673934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006357109,0.00001322367,0.001101487,0.000008983066,0.000002602319,0.00003107197,0.000009091157,0.00007570761,0.9982253,0.00002740236,0.00001083726,0.0004307663],"study_design_scores_gemma":[0.00001528415,0.0005474522,0.1421305,0.00001006891,0.00003609042,0.001286475,0.0001662187,0.00383245,0.850802,0.0002359002,0.0009135544,0.0000239224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991652,0.0001409798,0.0002943287,0.0000353627,0.000002590483,0.000002811763,0.00009812383,0.00001515777,0.0002454846],"genre_scores_gemma":[0.9991319,0.00008959251,0.0003736066,0.00001709117,0.000001578214,0.00000279509,0.0001608383,0.000006517934,0.0002161884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001363303,"threshold_uncertainty_score":0.0027107,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009736768688430864,"score_gpt":0.2272650187777191,"score_spread":0.2175282500892882,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}