{"id":"W3126881489","doi":"10.1371/journal.ppat.1009291","title":"Capsule carbohydrate structure determines virulence in Acinetobacter baumannii","year":2021,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"Virulence; Acinetobacter baumannii; Microbiology; Biology; Phagocytosis; Gene; Bacterial capsule; Pathogen; In vivo; Transposable element; Mutant; Bacteria; Genetics; Pseudomonas aeruginosa","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004470335,0.0001886429,0.0001956957,0.00003497316,0.00004165184,0.00003400249,0.0001773948,0.0001753919,0.0001066163],"category_scores_gemma":[0.0001159205,0.0001834043,0.00006545429,0.0001365862,0.00005824481,0.000005980246,0.0001243221,0.0001005378,0.00001510415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001890005,"about_ca_system_score_gemma":0.00008469815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006491506,"about_ca_topic_score_gemma":0.0002649555,"domain_scores_codex":[0.9987898,0.00007533746,0.0002352005,0.0004711525,0.0001189202,0.0003095384],"domain_scores_gemma":[0.9992453,0.000006550443,0.00006600036,0.0005136238,0.00009858999,0.00006988278],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001521192,0.00004094934,0.05168221,0.00002742808,0.00002153309,0.0001403632,0.00004672038,0.00001318187,0.9476196,0.000007035967,0.0001297867,0.0002559737],"study_design_scores_gemma":[0.0002658625,0.00004006661,0.1125979,0.00004281216,0.0000186748,0.00002488588,0.00005049444,0.00006100914,0.885085,0.00005174754,0.001518356,0.0002431456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985994,0.0004327692,0.00003409748,0.00005736373,0.0001827065,0.0001037729,0.0001515065,0.00001207294,0.0004263034],"genre_scores_gemma":[0.9972921,0.0001098727,0.001237774,0.0002224402,0.0002231696,0.000005409432,0.0002102923,0.00003095527,0.0006680019],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06253456,"threshold_uncertainty_score":0.747901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009736768688430864,"score_gpt":0.2272650187777191,"score_spread":0.2175282500892882,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}