{"id":"W3127001599","doi":"10.1099/ijsem.0.004644","title":"Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts","year":2021,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canada Research Chairs","keywords":"Biology; Subspecies; 16S ribosomal RNA; Microbiology; Strain (injury); Taxonomy (biology); Bacteria; Zoology; Genetics; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0017295,0.002269184,0.00403883,0.0007015608,0.000743633,0.0003941757,0.002382684,0.0008482282,0.0001771954],"category_scores_gemma":[0.002216634,0.00170446,0.001234799,0.001125464,0.002802045,0.0001894975,0.001848324,0.001546117,0.00003423371],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005145755,"about_ca_system_score_gemma":0.001250041,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006089257,"about_ca_topic_score_gemma":0.001267147,"domain_scores_codex":[0.9876477,0.001167679,0.005556282,0.00223981,0.001520471,0.001868118],"domain_scores_gemma":[0.9855323,0.002184671,0.00487911,0.001823168,0.004700663,0.0008801314],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004810645,0.001638329,0.09463768,0.001494266,0.002318426,0.0005110565,0.001949239,0.001061768,0.8885598,0.0004701262,0.002028817,0.0005198532],"study_design_scores_gemma":[0.02424155,0.01556751,0.6233388,0.0237675,0.005143985,0.1014456,0.02208711,0.003592348,0.1655909,0.0004019151,0.008021538,0.00680133],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9609984,0.02292647,0.002556726,0.003573246,0.002351996,0.002192428,0.005114147,0.00004157014,0.0002449722],"genre_scores_gemma":[0.9860312,0.005357943,0.005852027,0.0005047193,0.001135555,0.00007835244,0.0005538749,0.0002030273,0.0002832855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7229689,"threshold_uncertainty_score":0.9999118,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01583385052080335,"score_gpt":0.2148449503112957,"score_spread":0.1990110997904924,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}