{"id":"W3127276189","doi":"10.1093/bioinformatics/btab075","title":"RAD: a web application to identify region associated differentially expressed genes","year":2021,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Fundamental Research Funds for the Central Universities; Canadian Institutes of Health Research","keywords":"Biology; Gene; Computational biology; Python (programming language); Genetics; Web server; Genome; Chromatin; Computer science; The Internet; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001953356,0.002440803,0.001879829,0.003571841,0.0008238983,0.002013235,0.002454168,0.001352118,0.06125818],"category_scores_gemma":[0.003236074,0.001096947,0.001945523,0.001939778,0.000471829,0.001512587,0.002675757,0.001842588,0.04564263],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000640664,"about_ca_system_score_gemma":0.0009812402,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009289414,"about_ca_topic_score_gemma":0.001545709,"domain_scores_codex":[0.9990151,0.000145044,0.0000743991,0.0004284391,0.0002347776,0.0001022134],"domain_scores_gemma":[0.9986046,0.0008193117,0.0001596861,0.0001576866,0.0001394942,0.000119303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002874443,0.000527806,0.01663889,0.005616781,0.001164213,0.001382001,0.0007593799,0.006012127,0.05951558,0.005214104,0.7179741,0.1823206],"study_design_scores_gemma":[0.001526352,0.0004819982,0.04722323,0.0007027218,0.0006457412,0.002397962,0.0004127997,0.08089156,0.09886139,0.0241188,0.7421108,0.0006265301],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"methods","genre_scores_codex":[0.009317775,0.001009516,0.1207966,0.0003568562,0.0003818849,0.0002838701,0.2065566,0.6550544,0.006242556],"genre_scores_gemma":[0.07320963,0.0009983354,0.4278572,0.001472723,0.0002900878,0.002647645,0.389079,0.08939588,0.01504943],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.06125818,"threshold_uncertainty_score":0.2049291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01140976327081099,"score_gpt":0.2469567685546086,"score_spread":0.2355470052837976,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}