{"id":"W3127539291","doi":"10.1093/molbev/msab041","title":"Is the Dinoflagellate <i>Amoebophrya</i> Really Missing an mtDNA?","year":2021,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Agence Nationale de la Recherche; Institut Français de Bioinformatique","keywords":"Biology; Dinoflagellate; Mitochondrial DNA; Evolutionary biology; Genetics; Computational biology; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001765091,0.0001204283,0.00009553607,0.00001769486,0.0002909333,0.00002522192,0.000135723,0.000224225,0.00001671699],"category_scores_gemma":[0.00004531172,0.0001019095,0.00006716984,0.00007586132,0.0001799274,0.00000455399,0.0001519336,0.0001022041,0.000008668256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009417294,"about_ca_system_score_gemma":0.00006813546,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003591791,"about_ca_topic_score_gemma":0.00002594359,"domain_scores_codex":[0.9990431,0.00021543,0.0001055162,0.0003742206,0.00004925236,0.000212458],"domain_scores_gemma":[0.9994639,0.000007707683,0.00004420754,0.0003411329,0.00007336244,0.00006966833],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004808167,0.00002838418,0.02058643,0.00000747738,0.00005125159,0.00001557394,0.00005016334,0.000006863968,0.9741144,0.002897203,0.0004401344,0.001754033],"study_design_scores_gemma":[0.0007702426,0.0004176192,0.09752534,0.00001656183,0.00009224933,0.0002157298,0.0001343507,0.0001967414,0.8544194,0.02031075,0.02547209,0.0004289864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9639246,0.004716494,0.02818288,0.001572297,0.0001410377,0.0001059236,0.00003206775,0.00001390949,0.001310716],"genre_scores_gemma":[0.9962165,0.0001996875,0.0008330507,0.002143602,0.0001005889,0.000004396676,0.0002100916,0.00000873444,0.0002832929],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1196951,"threshold_uncertainty_score":0.415575,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008216134043310907,"score_gpt":0.2497725132330602,"score_spread":0.2415563791897493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}