{"id":"W3127731354","doi":"10.1093/gigascience/giab006","title":"AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology","year":2021,"lang":"en","type":"article","venue":"GigaScience","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Nuclear Waste Management Organization; Natural Sciences and Engineering Research Council of Canada; McKnight Foundation","keywords":"Computer science; Visualization; Pipeline (software); Data mining; Graphical user interface; Usability; Data visualization; Programming language; Human–computer interaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107738,0.00004804082,0.00006795388,0.00001781265,0.00005802682,0.000008335999,0.00005864557,0.00003085452,0.000005322719],"category_scores_gemma":[0.0001137645,0.0000444764,0.00001658339,0.00008108299,0.0001388531,7.058288e-7,0.00009579227,0.00001732576,0.000001153809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002754066,"about_ca_system_score_gemma":0.00006561847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006388294,"about_ca_topic_score_gemma":0.00006503607,"domain_scores_codex":[0.999552,0.00002081908,0.0001048547,0.0001963642,0.00004186995,0.00008406402],"domain_scores_gemma":[0.9996538,0.000007574922,0.00002980158,0.0001350345,0.0001509538,0.00002289465],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000004050647,0.00001535653,0.002150993,0.0000033411,0.000004390768,5.791057e-7,0.00006139468,0.00001435862,0.9957713,0.0002389786,0.0002187159,0.001516474],"study_design_scores_gemma":[0.0001329025,0.0001327763,0.2323537,0.00000383389,0.000004772513,0.00002855869,0.00008292034,0.00008834781,0.7654461,0.0002479968,0.001422705,0.00005546333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977511,0.0005827175,0.001101857,0.0001896116,0.0001342509,0.00003846641,0.000005434118,0.000001287854,0.0001953357],"genre_scores_gemma":[0.9960051,0.0002366051,0.003421509,0.0001623899,0.00002795182,0.00000265212,0.000007685918,0.000002592066,0.0001334739],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2303253,"threshold_uncertainty_score":0.1813695,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009364098253512788,"score_gpt":0.2330249287256213,"score_spread":0.2236608304721086,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}