{"id":"W3127731354","doi":"10.1093/gigascience/giab006","title":"AXIOME3: Automation, eXtension, and Integration Of Microbial Ecology","year":2021,"lang":"en","type":"article","venue":"GigaScience","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Nuclear Waste Management Organization; Natural Sciences and Engineering Research Council of Canada; McKnight Foundation","keywords":"Computer science; Visualization; Pipeline (software); Data mining; Graphical user interface; Usability; Data visualization; Programming language; Human–computer interaction","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005900943,0.002097361,0.001155447,0.001611031,0.0008196727,0.002368096,0.003504229,0.001056546,0.01812829],"category_scores_gemma":[0.01131222,0.001581334,0.003432608,0.00103748,0.001047481,0.003396238,0.004735359,0.003143851,0.01295894],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007907528,"about_ca_system_score_gemma":0.002233006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002621952,"about_ca_topic_score_gemma":0.00330461,"domain_scores_codex":[0.9974253,0.0004851371,0.0002661663,0.000667827,0.0008867565,0.0002688013],"domain_scores_gemma":[0.9962766,0.00149887,0.0002166057,0.0008969185,0.0008797472,0.0002312629],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002702913,0.0007093398,0.0268712,0.003238661,0.001054497,0.001763579,0.002245412,0.03301508,0.06643893,0.0280424,0.3447646,0.4891534],"study_design_scores_gemma":[0.0006435388,0.0002958016,0.01353791,0.0004660855,0.0002501431,0.001496317,0.0002119359,0.2726945,0.1255747,0.03511706,0.5490485,0.0006635094],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01204313,0.0003307379,0.54769,0.0006279778,0.0002539679,0.0003275847,0.01160859,0.4203268,0.006791183],"genre_scores_gemma":[0.06234838,0.0004098942,0.8278217,0.0011528,0.0001020266,0.001165534,0.04300465,0.05655944,0.007435538],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01812829,"threshold_uncertainty_score":0.0606451,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009364098253512788,"score_gpt":0.2330249287256213,"score_spread":0.2236608304721086,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}