{"id":"W3128297651","doi":"10.1093/jac/dkab020","title":"Spatial distribution of <i>Escherichia coli</i> ST131 C subclades in a centralized Canadian urban region","year":2021,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of Guelph","funders":"Canadian Institutes of Health Research; Agence Nationale de la Recherche; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Escherichia coli; Distribution (mathematics); Population; clone (Java method); Geography; Immigration; Clade; Antibiotic resistance; Biology; Demography; Medicine; Microbiology; Genetics; Gene; Environmental health; Antibiotics; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000321253,0.0004044138,0.0002612974,0.00162308,0.001970714,0.001225809,0.0009616246,0.0003693794,0.00236212],"category_scores_gemma":[0.001038707,0.0002585378,0.0003121985,0.003634156,0.0009117411,0.0001955164,0.001049012,0.0003155635,0.0002676765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.016099,"about_ca_system_score_gemma":0.01851372,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9857826,"about_ca_topic_score_gemma":0.9891718,"domain_scores_codex":[0.9993924,0.00003543158,0.00002887528,0.00014554,0.0001672722,0.0002305835],"domain_scores_gemma":[0.9991137,0.00005878753,0.0001897307,0.00003161095,0.0003894617,0.0002166083],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008216996,0.00001808163,0.9912328,0.00004001517,0.00003474977,0.0001772271,0.001046565,0.0002358437,0.0008630651,0.0001079629,0.0006643258,0.005497178],"study_design_scores_gemma":[0.000003809477,0.00002338161,0.9973411,0.0000178586,0.00001181375,0.0001125989,0.001673011,0.0001776254,0.00009496784,0.00001145375,0.0005231823,0.000009199012],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966378,0.0001507621,0.0001084859,0.00008202832,0.000002552882,0.00003405972,0.001718471,0.00001161474,0.001254255],"genre_scores_gemma":[0.9981154,0.0001558164,0.0002469193,0.00004730359,0.000002460341,0.00001126298,0.0009424783,0.000003394671,0.0004749478],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.016099,"threshold_uncertainty_score":0.116807,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006497144729556467,"score_gpt":0.2216858994418146,"score_spread":0.2151887547122582,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}