{"id":"W3128409541","doi":"10.3389/fmicb.2021.631845","title":"Staphylococcus aureus ST59: Concurrent but Separate Evolution of North American and East Asian Lineages","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Health Services","funders":"Canadian Institutes of Health Research; Universiti Putra Malaysia; Université de Genève; Alberta Health Services","keywords":"Lineage (genetic); Biology; Evolutionary biology; East Asia; Staphylococcus aureus; Phylogenetic tree; Genetics; Gene; Geography; China; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007314096,0.0002117406,0.0002457914,0.0008338773,0.0006131176,0.000982232,0.0002665686,0.0002966467,0.001012162],"category_scores_gemma":[0.0007249491,0.0002103371,0.0002253994,0.0009872561,0.0003511551,0.0004583885,0.0006924486,0.0004096719,0.0002088909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003892276,"about_ca_system_score_gemma":0.0004297491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00680875,"about_ca_topic_score_gemma":0.01295742,"domain_scores_codex":[0.9996939,0.00004938725,0.00002866072,0.00009707806,0.00006653619,0.00006460715],"domain_scores_gemma":[0.9993588,0.00008459982,0.0002087089,0.00005177069,0.0002139156,0.00008210111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008596854,0.00008499514,0.8856829,0.00009781789,0.0002040318,0.001087052,0.006606619,0.0001521997,0.06675482,0.0006517024,0.0002685441,0.03754953],"study_design_scores_gemma":[0.000008247566,0.00004961843,0.9943388,0.00003019707,0.00006130022,0.0006343829,0.001667878,0.0002504972,0.001269888,0.00008617486,0.001592719,0.00001022913],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980259,0.0004626376,0.0001470732,0.00007066931,0.000004844404,0.000005570225,0.00004440359,0.000002661808,0.0012363],"genre_scores_gemma":[0.9983182,0.0007520673,0.0003210667,0.00006043013,0.00001051395,0.00000480539,0.0001541596,0.00000438791,0.0003745776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00680875,"threshold_uncertainty_score":0.01353824,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0079840093270155,"score_gpt":0.248832858553659,"score_spread":0.2408488492266435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}