{"id":"W3128409541","doi":"10.3389/fmicb.2021.631845","title":"Staphylococcus aureus ST59: Concurrent but Separate Evolution of North American and East Asian Lineages","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Alberta Health Services","funders":"Canadian Institutes of Health Research; Universiti Putra Malaysia; Université de Genève; Alberta Health Services","keywords":"Lineage (genetic); Biology; Evolutionary biology; East Asia; Staphylococcus aureus; Phylogenetic tree; Genetics; Gene; Geography; China; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001382966,0.0002586077,0.0008677951,0.0002614747,0.0000500718,0.000009270479,0.000128878,0.0001238665,0.00001567379],"category_scores_gemma":[0.0001338671,0.0002547177,0.0001152687,0.0005887263,0.001034716,0.00004529281,0.0001088985,0.0003590649,0.000006623188],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002437345,"about_ca_system_score_gemma":0.0003430287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008071167,"about_ca_topic_score_gemma":0.0008712144,"domain_scores_codex":[0.9981905,0.0001839335,0.0005413522,0.000538234,0.00007029001,0.0004757403],"domain_scores_gemma":[0.9989924,0.00003247526,0.0002808408,0.0003484408,0.000223038,0.0001227559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002507385,0.0002147637,0.6690456,0.00013821,0.0001411395,0.000128124,0.0002535276,0.0000125517,0.3066042,0.00003391911,0.01306596,0.01011123],"study_design_scores_gemma":[0.003384946,0.0006910894,0.9060761,0.0002524132,0.0001892935,0.0001263737,0.00301851,0.0001230679,0.05677027,0.00004423247,0.02876182,0.0005618365],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9879936,0.004526705,0.005253023,0.0005083627,0.0007637911,0.0003583191,0.0003578989,0.00003056234,0.0002077434],"genre_scores_gemma":[0.9908071,0.0004409824,0.007912848,0.0001823608,0.00009354913,0.00001293733,0.000180699,0.00002643679,0.0003430854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.249834,"threshold_uncertainty_score":0.9999905,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0079840093270155,"score_gpt":0.248832858553659,"score_spread":0.2408488492266435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}