{"id":"W3128427110","doi":"10.1093/g3journal/jkaa021","title":"Transcriptome analysis implicates secondary metabolite production, redox reactions, and programmed cell death during allorecognition in <i>Cryphonectria parasitica</i>","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Carleton University","funders":"","keywords":"Transcriptome; Biology; Metabolome; Secondary metabolite; Conidiation; Metabolite; Gene; Cryphonectria; Mating type; Cell biology; Programmed cell death; Gene expression; Genetics; Biochemistry; Apoptosis; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000165885,0.0002331528,0.0002846336,0.0002391675,0.0001342467,0.00007895939,0.0001647896,0.0001492397,0.00003119665],"category_scores_gemma":[0.00001367996,0.0002448729,0.000144203,0.0006443328,0.00006424786,0.00001778894,0.00007135655,0.0002130658,0.00001362382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001923866,"about_ca_system_score_gemma":0.00007473351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003834919,"about_ca_topic_score_gemma":0.00008122334,"domain_scores_codex":[0.9982222,0.000114622,0.000404646,0.0006775974,0.0001611794,0.0004197364],"domain_scores_gemma":[0.9992657,0.00001568627,0.00008887824,0.0002784667,0.000136433,0.0002148333],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001864581,0.00009007723,0.02000032,0.00007492147,0.0003003546,0.000006504811,0.0001635312,0.0003053183,0.9443201,0.000003868651,0.00004823287,0.03450029],"study_design_scores_gemma":[0.0006536662,0.0001867976,0.0205206,0.000005349118,0.0003264038,0.00004938414,0.0002139476,0.0004151641,0.9013606,0.00004379198,0.07584612,0.0003781601],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.868809,0.129622,0.0003246299,0.000371884,0.00008055416,0.0004321664,0.0001099129,0.00002769447,0.0002221941],"genre_scores_gemma":[0.8957853,0.1008969,0.001754888,0.0001130573,0.000280036,0.0001148827,0.0006965845,0.00002996676,0.0003283495],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07579789,"threshold_uncertainty_score":0.9985629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01875780161755652,"score_gpt":0.2667068651486987,"score_spread":0.2479490635311422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}