{"id":"W3128427110","doi":"10.1093/g3journal/jkaa021","title":"Transcriptome analysis implicates secondary metabolite production, redox reactions, and programmed cell death during allorecognition in <i>Cryphonectria parasitica</i>","year":2020,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Carleton University","funders":"","keywords":"Transcriptome; Biology; Metabolome; Secondary metabolite; Conidiation; Metabolite; Gene; Cryphonectria; Mating type; Cell biology; Programmed cell death; Gene expression; Genetics; Biochemistry; Apoptosis; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008122299,0.000237174,0.0002126022,0.000250197,0.0001791226,0.0002608066,0.00009822089,0.0002159661,0.0003784253],"category_scores_gemma":[0.00007766524,0.0001249325,0.0002761174,0.0001993456,0.0001663721,0.0001995804,0.0001973718,0.0002820932,0.0001645676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002062629,"about_ca_system_score_gemma":0.0001620526,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005971905,"about_ca_topic_score_gemma":0.0009479334,"domain_scores_codex":[0.9999144,0.000007695715,0.000005671608,0.00003289596,0.00002098386,0.00001823527],"domain_scores_gemma":[0.9999093,0.00001223852,0.000032915,0.00001110774,0.0000157013,0.00001873086],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002035451,0.000003867352,0.0006011751,0.00001374098,0.000001857663,0.00002555697,0.00001582176,0.00001244208,0.9989551,0.00001616621,0.000008142606,0.0003256212],"study_design_scores_gemma":[0.000009106729,0.0003477419,0.450864,0.00001224372,0.00005502734,0.0006906153,0.00022078,0.00190473,0.543309,0.0001990308,0.002371949,0.00001561266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965547,0.0003762615,0.00134559,0.00004483897,0.000006604848,0.00001446685,0.0008905183,0.0000489451,0.0007180221],"genre_scores_gemma":[0.9954224,0.0002160912,0.001329429,0.00006684969,0.000004758305,0.0000252268,0.001673108,0.00001403629,0.001248102],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005971905,"threshold_uncertainty_score":0.001496553,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01875780161755652,"score_gpt":0.2667068651486987,"score_spread":0.2479490635311422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}