{"id":"W3128676145","doi":"10.1093/plphys/kiab023","title":"Large-scale identification of ubiquitination sites on membrane-associated proteins in <i>Arabidopsis thaliana</i> seedlings","year":2021,"lang":"en","type":"letter","venue":"PLANT PHYSIOLOGY","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"H2020 European Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Queen's University; Gatsby Charitable Foundation","keywords":"Ubiquitin; Arabidopsis thaliana; Arabidopsis; Identification (biology); F-box protein; Kinase; Cell biology; Biology; Membrane protein; Botany; Biochemistry; Membrane; Ubiquitin ligase; Gene; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000357009,0.0003196356,0.0005244782,0.0001524501,0.00005837845,0.00001729899,0.0003075531,0.001147811,0.0000659345],"category_scores_gemma":[0.0002112253,0.0003292933,0.0001817273,0.0001796049,0.00007031467,0.000005106318,0.00008924057,0.000648186,0.00002101191],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003885853,"about_ca_system_score_gemma":0.0001070667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004879029,"about_ca_topic_score_gemma":0.000140698,"domain_scores_codex":[0.9976475,0.0004043553,0.0005654576,0.0007201783,0.0002259846,0.0004365003],"domain_scores_gemma":[0.9987053,0.00007007494,0.0005571794,0.0004755768,0.0001599135,0.00003191872],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007601781,0.0001718206,0.0001273462,0.0002705516,0.00007532837,0.00002021802,0.000151601,0.00002660564,0.9387219,0.00001833442,0.06030782,0.00003246253],"study_design_scores_gemma":[0.0005586235,0.0002513158,0.001412838,0.0001757486,0.00003434646,0.000008958309,0.00006169314,0.00009090337,0.9442735,0.0001587783,0.05261523,0.0003581023],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9788147,0.0003094969,0.00002406744,0.01571798,0.0002960377,0.0007819211,0.003080497,0.0000289453,0.0009463967],"genre_scores_gemma":[0.8859224,0.0003208346,0.00005536703,0.05518229,0.001115756,0.0002745155,0.05554207,0.0000736986,0.001513121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09289231,"threshold_uncertainty_score":0.9999159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01493806435746477,"score_gpt":0.2314810695267478,"score_spread":0.216543005169283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}