{"id":"W3128859043","doi":"10.1097/qad.0000000000002829","title":"Rectal microbiota diversity in Kenyan MSM is inversely associated with frequency of receptive anal sex, independent of HIV status","year":2021,"lang":"en","type":"article","venue":"AIDS","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Biology; Roseburia; Men who have sex with men; Prevotella; Demography; Immunology; Bacteroides; Human immunodeficiency virus (HIV); Syphilis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004117503,0.0001259002,0.0003346489,0.0002602711,0.00009944132,0.000004391242,0.0001480661,0.000220633,0.001253027],"category_scores_gemma":[0.0003857515,0.0001199381,0.00007622862,0.0007706101,0.0003889551,0.0001212991,0.0002627175,0.0005067309,0.00004605974],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000234788,"about_ca_system_score_gemma":0.0003208704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002452709,"about_ca_topic_score_gemma":0.0006697431,"domain_scores_codex":[0.9984535,0.0005070922,0.0002602977,0.0003723472,0.0000836375,0.0003231021],"domain_scores_gemma":[0.998913,0.0001570282,0.0001591492,0.0003093262,0.0004388262,0.00002267536],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008451895,0.0003630495,0.5648074,0.000008611945,0.000366635,0.0000127285,0.001714706,0.000003287141,0.4318677,0.00005904173,0.0003196473,0.0003927898],"study_design_scores_gemma":[0.001166382,0.0003616095,0.5387629,0.00004012887,0.00003035857,0.00001799626,0.001324052,3.064059e-7,0.458,0.00008180462,0.0001182854,0.00009615104],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996116,0.0002787774,0.00001826667,0.00006033443,0.0001199973,0.0001634303,0.0002619135,0.0000144182,0.002966795],"genre_scores_gemma":[0.9975106,0.00007240811,0.0001292829,0.00001848027,0.000005506663,0.000003578572,0.0001515814,0.000009409973,0.002099177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02613232,"threshold_uncertainty_score":0.99966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02538316811695406,"score_gpt":0.2620726972359407,"score_spread":0.2366895291189867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}