{"id":"W3129040943","doi":"10.1128/mra.01027-20","title":"Hybrid Nanopore-Illumina Assemblies for Five Extraintestinal Pathogenic Escherichia coli Isolates","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Nanopore sequencing; Escherichia coli; Pathogenic Escherichia coli; Microbiology; Multiple drug resistance; Nanopore; Multi drug resistant; Biology; Drug resistance; Genetics; Gene; DNA sequencing; Materials science; Nanotechnology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007255489,0.0007432041,0.0004285488,0.0006545447,0.0005878589,0.0004025092,0.0004183091,0.0007152788,0.001855651],"category_scores_gemma":[0.0007055121,0.0004649187,0.0005207865,0.0005162211,0.0002762395,0.0004498552,0.000840617,0.0005422545,0.0009896321],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003253564,"about_ca_system_score_gemma":0.0001576042,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001024235,"about_ca_topic_score_gemma":0.003377842,"domain_scores_codex":[0.9991615,0.0001328622,0.00006868877,0.000219763,0.0002769639,0.0001402057],"domain_scores_gemma":[0.9994745,0.0001511402,0.00006986251,0.00006014231,0.0001686599,0.00007576268],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001276712,0.00002408951,0.0007933269,0.0001103126,0.00003771851,0.00007389668,0.0001135791,0.0003622882,0.9935081,0.00009189603,0.0004337811,0.004323424],"study_design_scores_gemma":[0.000007009881,0.0002485978,0.004351601,0.0000159507,0.00006503308,0.0002372633,0.0001085423,0.002679721,0.9852,0.00006695772,0.006980449,0.00003885136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9125007,0.002101255,0.07221102,0.0002480542,0.0001373889,0.0002132217,0.00484968,0.001339155,0.006399545],"genre_scores_gemma":[0.7689319,0.001258679,0.202218,0.0007322714,0.00004175398,0.0006432345,0.01638762,0.0006801222,0.00910632],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001855651,"threshold_uncertainty_score":0.006207764,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01077709264232364,"score_gpt":0.2431343647212308,"score_spread":0.2323572720789072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}