{"id":"W3129059666","doi":"10.1101/2021.02.05.21251207","title":"Endometrial microbiota composition is associated with reproductive outcome in infertile patients","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Reproductive System and Pregnancy","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Pacific Centre for Reproductive Medicine","funders":"Horizon 2020 Framework Programme; Instituto de Salud Carlos III; Ministerio de Economía y Competitividad; European Commission","keywords":"Miscarriage; Pregnancy; Ureaplasma; Live birth; Microbiome; Biology; Gardnerella vaginalis; Gynecology; Infertility; Obstetrics; Embryo transfer; Medicine; Bacterial vaginosis; Bioinformatics; Microbiology; Mycoplasma; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000805477,0.0004914287,0.001153577,0.0004238496,0.0001156627,0.00005619795,0.0003903685,0.0007994554,0.0004119633],"category_scores_gemma":[0.0008922965,0.0004240917,0.0002223349,0.0005355171,0.00019239,0.0001160074,0.0005389772,0.001196155,0.0001387812],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002652908,"about_ca_system_score_gemma":0.0001499826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002747618,"about_ca_topic_score_gemma":0.0000593707,"domain_scores_codex":[0.9956742,0.001194792,0.0009060748,0.00162963,0.0001076941,0.0004876252],"domain_scores_gemma":[0.9972934,0.0001892353,0.0006858537,0.00126595,0.0005383681,0.00002726435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002441882,0.0005416304,0.9266056,0.0001068975,0.0006311897,0.00003174697,0.001862293,0.0000174107,0.0693237,0.000007493993,0.0003167019,0.0003111828],"study_design_scores_gemma":[0.00390529,0.0002007805,0.8950356,0.001044758,0.0001243781,0.00001784934,0.00009818008,2.625628e-7,0.09853113,0.0000463332,0.0004420982,0.000553379],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888828,0.004549121,0.00002860275,0.0002383872,0.003898005,0.001292655,0.0002831835,0.00008520286,0.0007420346],"genre_scores_gemma":[0.9960974,0.00003185318,0.00004672548,0.00006999422,0.0001312484,0.0001330253,0.002300717,0.00005005054,0.001138964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03156999,"threshold_uncertainty_score":0.9998211,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02491115303683546,"score_gpt":0.258754636973146,"score_spread":0.2338434839363105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}