{"id":"W3129103153","doi":"10.1101/2021.01.30.428927","title":"Geography, not host identity, shapes bacterial community in reindeer lichens","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Canada First Research Excellence Fund; Université Laval","keywords":"Lichen; Dominance (genetics); Ecology; Biology; Boreal; Cladonia; Taiga; Abundance (ecology); Taxon; Geography; Proteobacteria; 16S ribosomal RNA; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002343473,0.0002081131,0.0002980082,0.0005947387,0.0002958296,0.0005808646,0.0001251425,0.0002264942,0.000771029],"category_scores_gemma":[0.000370953,0.0001234942,0.0001571006,0.0003157555,0.0003554767,0.0004334577,0.0003886186,0.0001335757,0.0001882077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001462136,"about_ca_system_score_gemma":0.0001432223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002306955,"about_ca_topic_score_gemma":0.005694176,"domain_scores_codex":[0.9997893,0.00004250331,0.00002083977,0.0000744246,0.00002910332,0.00004388264],"domain_scores_gemma":[0.9996574,0.00006649963,0.0001372022,0.00002863023,0.00004293891,0.00006735888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002264003,0.00005255043,0.7944929,0.0001671389,0.00006942746,0.0002233137,0.0007107155,0.0004241938,0.1950464,0.00007120876,0.00004112319,0.008474634],"study_design_scores_gemma":[9.466564e-7,0.00004889939,0.9976732,0.000007923718,0.00001105928,0.0001276976,0.0003514705,0.0001206646,0.001460987,0.00002087196,0.0001723236,0.000003950433],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995955,0.0001804688,0.00006097102,0.000004701432,6.46916e-7,0.000001327978,0.00003322035,0.000002643197,0.0001207538],"genre_scores_gemma":[0.9995109,0.0001166582,0.0001929282,0.000007662553,0.000001481093,0.000002182422,0.00007669056,0.000001435105,0.00009010283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002306955,"threshold_uncertainty_score":0.004586995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02352572380511745,"score_gpt":0.21992071181211,"score_spread":0.1963949880069926,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}