{"id":"W3129298162","doi":"10.1186/s40168-021-00999-x","title":"Genomic evidence for sulfur intermediates as new biogeochemical hubs in a model aquatic microbial ecosystem","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Natural Sciences and Engineering Research Council of Canada; Networks of Centres of Excellence of Canada; ArcticNet; Canada First Research Excellence Fund; Fonds Québécois de la Recherche sur la Nature et les Technologies; Parks Canada; Fonds de recherche du Québec – Nature et technologies; Université Laval","keywords":"Sulfur cycle; Biogeochemical cycle; Sulfur; Chemocline; Anoxic waters; Sulfur metabolism; Archaea; Environmental chemistry; Biology; Aquatic ecosystem; Biogeochemistry; Ecology; Sulfate-reducing bacteria; Metagenomics; Chemistry; Bacteria; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002519558,0.0002197479,0.0003517969,0.00007288587,0.0001124174,0.0000310441,0.0005636326,0.0002311387,0.002134276],"category_scores_gemma":[0.0002370497,0.0002362906,0.0001393028,0.0002791173,0.0001588348,0.0001410987,0.0005917525,0.000254341,0.001361335],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003504609,"about_ca_system_score_gemma":0.0002136622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006811863,"about_ca_topic_score_gemma":0.008351801,"domain_scores_codex":[0.998399,0.0001693379,0.000400759,0.0004843001,0.00004530267,0.0005012657],"domain_scores_gemma":[0.9989938,0.0003279317,0.00009865293,0.0004272205,0.00001061889,0.0001417831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001032156,0.0001086563,0.002620073,0.00003473189,0.0000142991,0.000009990593,0.0007464812,0.0004111053,0.9770275,0.00001581902,0.01873824,0.0001698577],"study_design_scores_gemma":[0.001933222,0.0001801833,0.001251258,0.0002161171,0.00004901511,0.0002071455,0.00017489,0.003852684,0.9702696,0.006065669,0.01512237,0.0006778659],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977272,0.0002104104,0.0002583825,0.0009992674,0.0002090258,0.0003548946,0.00008984703,0.00002939559,0.0001215394],"genre_scores_gemma":[0.9943708,0.00004156852,0.003050067,0.001332093,0.00006297688,0.00002650606,0.0002570841,0.00002372222,0.0008351955],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007670614,"threshold_uncertainty_score":0.9994162,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03316101865633799,"score_gpt":0.273949153033939,"score_spread":0.240788134377601,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}