{"id":"W3129298162","doi":"10.1186/s40168-021-00999-x","title":"Genomic evidence for sulfur intermediates as new biogeochemical hubs in a model aquatic microbial ecosystem","year":2021,"lang":"en","type":"article","venue":"Microbiome","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Center for Northern Studies","funders":"Natural Sciences and Engineering Research Council of Canada; Networks of Centres of Excellence of Canada; ArcticNet; Canada First Research Excellence Fund; Fonds Québécois de la Recherche sur la Nature et les Technologies; Parks Canada; Fonds de recherche du Québec – Nature et technologies; Université Laval","keywords":"Sulfur cycle; Biogeochemical cycle; Sulfur; Chemocline; Anoxic waters; Sulfur metabolism; Archaea; Environmental chemistry; Biology; Aquatic ecosystem; Biogeochemistry; Ecology; Sulfate-reducing bacteria; Metagenomics; Chemistry; Bacteria; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001311738,0.000266501,0.0002052075,0.0006206195,0.0003813491,0.000557619,0.0001732232,0.0002895788,0.0006416796],"category_scores_gemma":[0.0003162071,0.0001341387,0.000252718,0.0006851638,0.0003267026,0.0002059351,0.0004797902,0.0001660731,0.0001158919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004754871,"about_ca_system_score_gemma":0.0004647041,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004236046,"about_ca_topic_score_gemma":0.006608706,"domain_scores_codex":[0.9998882,0.000007358982,0.000005785067,0.00005956897,0.00001895803,0.00002009898],"domain_scores_gemma":[0.9997817,0.00004984661,0.00006653518,0.00001683207,0.00003206067,0.00005314551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008168526,0.00007728271,0.1510227,0.0002382142,0.0001082178,0.0001974995,0.0005081983,0.001468563,0.8380389,0.0006056834,0.0001160426,0.006801898],"study_design_scores_gemma":[0.00004315409,0.0005184161,0.945583,0.0000334748,0.0002195393,0.0004203502,0.0008881362,0.01355136,0.03465371,0.001585183,0.002474932,0.00002881341],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983609,0.00007479252,0.0004919806,0.00001322824,7.99263e-7,0.000008214394,0.0007754655,0.00001765855,0.0002567806],"genre_scores_gemma":[0.9961278,0.00005953836,0.001864548,0.00002418806,0.000001494093,0.00002025996,0.001748629,0.000004990856,0.0001485692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004236046,"threshold_uncertainty_score":0.008422792,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03316101865633799,"score_gpt":0.273949153033939,"score_spread":0.240788134377601,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}