{"id":"W3129497573","doi":"10.1111/1462-2920.15432","title":"Comprehensive transcriptome profiling reveals abundant long non‐coding <scp>RNAs</scp> associated with development of the rice false smut fungus, <i>Ustilaginoidea virens</i>","year":2021,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Fundamental Research Funds for the Central Universities","keywords":"Biology; Smut; Fungus; Transcriptome; Profiling (computer programming); Botany; Gene; Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006250684,0.0002031614,0.0002226629,0.0002920885,0.0001923676,0.0002618593,0.00008322204,0.0001513932,0.000440398],"category_scores_gemma":[0.00007817467,0.0001100607,0.0003271755,0.0003468753,0.0001094273,0.0001663605,0.0001929615,0.0002601197,0.0001454053],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001542814,"about_ca_system_score_gemma":0.0002003259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001190936,"about_ca_topic_score_gemma":0.001912566,"domain_scores_codex":[0.999921,0.000003797883,0.000004435334,0.00003485774,0.00001873967,0.00001720542],"domain_scores_gemma":[0.9999436,0.000009330774,0.00002016507,0.00000444364,0.00001018962,0.00001228318],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005895067,0.000004331573,0.002116383,0.00003426852,0.00000816094,0.00003691854,0.00002627544,0.0000509032,0.9957415,0.0000273366,0.00005894499,0.001836084],"study_design_scores_gemma":[0.00001554827,0.0002607109,0.6072649,0.00002612037,0.0001492656,0.0008756237,0.0002862404,0.004871187,0.3784213,0.0002634969,0.007526141,0.00003951562],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9898962,0.001371202,0.003549291,0.00005115765,0.00001237156,0.00001574544,0.004117361,0.0001664704,0.0008201667],"genre_scores_gemma":[0.9853693,0.000779095,0.003618241,0.0001126497,0.00001026877,0.00003464431,0.008273295,0.0000497468,0.001752757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001190936,"threshold_uncertainty_score":0.002368033,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0111921032261678,"score_gpt":0.2244050489151696,"score_spread":0.2132129456890018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}