{"id":"W3129837441","doi":"10.3168/jds.2020-19252","title":"Longitudinal assessment revealed the shifts in rumen and colon mucosal-attached microbiota of dairy calves during weaning transition","year":2021,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Alberta","funders":"","keywords":"Rumen; Lachnospiraceae; Weaning; Biology; Prevotella; Firmicutes; Animal science; Intestinal mucosa; Bacteroides; Bacteroidetes; Large intestine; Internal medicine; Food science; Bacteria; Fermentation; Biochemistry; Medicine; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004200824,0.0002242585,0.0003390283,0.0005511015,0.0002821419,0.0004950975,0.0001638134,0.0003282136,0.0003924127],"category_scores_gemma":[0.0005553204,0.0001767278,0.000201217,0.0002921762,0.0001812509,0.0003311687,0.0002900483,0.0004230673,0.000141358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003158287,"about_ca_system_score_gemma":0.0002621661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003485236,"about_ca_topic_score_gemma":0.006368665,"domain_scores_codex":[0.9997519,0.00003259833,0.0000141774,0.0000682916,0.00006174854,0.00007131512],"domain_scores_gemma":[0.9995642,0.00004346604,0.0001458646,0.00001540105,0.0001055066,0.0001255571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001437111,0.0001065304,0.4948428,0.0000671256,0.00009184112,0.0003146411,0.0006429576,0.00008606727,0.4937574,0.00002560384,0.00005834293,0.008569524],"study_design_scores_gemma":[0.000002017407,0.0002855849,0.9942854,0.000005447207,0.00002586486,0.00009120133,0.0002549446,0.00009235412,0.004801767,0.000006918558,0.0001442293,0.000004268339],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999414,0.0002237105,0.0002023164,0.00000528341,0.000001438441,0.000003751225,0.00007866844,0.000002492738,0.00006848665],"genre_scores_gemma":[0.9985128,0.0002481919,0.0003704717,0.00003026351,0.000003654386,0.00001271658,0.0004018635,0.000003131467,0.0004169502],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003485236,"threshold_uncertainty_score":0.006929874,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02275511879428864,"score_gpt":0.2729911423411379,"score_spread":0.2502360235468493,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}