{"id":"W3130198625","doi":"10.1101/2021.02.18.431927","title":"Transcriptomic and metabolomic responses to carbon and nitrogen sources in <i>Methylomicrobium album BG8</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; Alberta Innovates","keywords":"Methanotroph; Biology; Biochemistry; Pentose phosphate pathway; Nitrogen assimilation; Chemistry; Metabolism; Anaerobic oxidation of methane; Glycolysis; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001877383,0.000669622,0.0004513582,0.0004451064,0.0002540956,0.000471348,0.000186567,0.0003314429,0.0004278416],"category_scores_gemma":[0.000238614,0.0001690205,0.0003841961,0.0005026387,0.0002135188,0.0002531284,0.0003231144,0.0003538347,0.0002307103],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002309355,"about_ca_system_score_gemma":0.000232253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002133586,"about_ca_topic_score_gemma":0.00202573,"domain_scores_codex":[0.9997765,0.00002278588,0.00002025631,0.00007977057,0.00005764582,0.00004292937],"domain_scores_gemma":[0.9998432,0.00003220905,0.00004063719,0.00001377005,0.00004631888,0.0000237421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008709229,0.000008622819,0.0009329633,0.00002922132,0.000004717936,0.00002381287,0.00001602576,0.0000393343,0.9981897,0.000007587458,0.0000192895,0.0006415716],"study_design_scores_gemma":[0.00001554548,0.0005068251,0.1588339,0.00003547302,0.00009112497,0.0003265113,0.0004460351,0.00235153,0.8342376,0.0000994228,0.003017303,0.00003879032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9910039,0.0007719079,0.001528501,0.0001090936,0.00002446421,0.00004250158,0.005757015,0.00008368438,0.0006789116],"genre_scores_gemma":[0.9843299,0.0004958878,0.004531885,0.0001592241,0.00002155105,0.0001356556,0.008565378,0.00005492923,0.001705536],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002133586,"threshold_uncertainty_score":0.004242361,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007741918594961522,"score_gpt":0.2002916668142394,"score_spread":0.1925497482192779,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}