{"id":"W3131345157","doi":"10.1101/2021.02.23.432613","title":"Cervical Squamous Intraepithelial Lesions are Associated with Changes in the Vaginal Microbiota of Mexican Women","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of Calgary; University of British Columbia","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Canadian Institutes of Health Research; Universidad Nacional Autónoma de México; Consejo Nacional de Ciencia y Tecnología","keywords":"Cervical cancer; Bacterial vaginosis; Microbiome; Population; Carcinogenesis; Biology; HPV infection; Cancer; Oncology; Gynecology; Internal medicine; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001701402,0.0002061868,0.0001855965,0.0004766949,0.0003437673,0.0004351248,0.0001064343,0.0002336597,0.001688826],"category_scores_gemma":[0.0006353369,0.0001737026,0.0002502951,0.0005132349,0.0001526421,0.0001535967,0.0003011307,0.000223292,0.0001449769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001804903,"about_ca_system_score_gemma":0.0001504935,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005640705,"about_ca_topic_score_gemma":0.005324821,"domain_scores_codex":[0.9998966,0.00002284297,0.000006663341,0.00002814303,0.0000187789,0.00002684753],"domain_scores_gemma":[0.9998121,0.00001844356,0.0001002734,0.00001243559,0.00002639984,0.00003044785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000298348,0.00005267973,0.9885858,0.00005187483,0.00006016151,0.0001320664,0.0003657443,0.00001705121,0.005094003,0.0000162818,0.0001838609,0.005142129],"study_design_scores_gemma":[0.000003263477,0.00006832692,0.9985371,0.00001163613,0.00002666829,0.0001333087,0.0006170972,0.00005864645,0.0001788479,0.000013392,0.0003494352,0.000002252318],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987652,0.0004095323,0.00005517377,0.00008159772,0.000007385922,0.000007327997,0.0003108491,0.000003261146,0.0003596605],"genre_scores_gemma":[0.9991603,0.0002582414,0.000102713,0.00003388844,0.000007974782,0.000006945294,0.0002185761,0.000001426931,0.0002099968],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005640705,"threshold_uncertainty_score":0.01121575,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02228616052325836,"score_gpt":0.258903953240241,"score_spread":0.2366177927169826,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}