{"id":"W3131632038","doi":"10.1186/s12885-021-07876-8","title":"Oligosaccharides increase the genotoxic effect of colibactin produced by pks+ Escherichia coli strains","year":2021,"lang":"en","type":"article","venue":"BMC Cancer","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Cegep Edouard Montpetit; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Medizinische Fakultät, Westfälische Wilhelms-Universität Münster; Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Ministère de la Santé et des Services sociaux; Ministère de la Santé; Canadian Institutes of Health Research; Université de Montréal; Institute of Cancer Research; Institut Du Cancer de Montréal","keywords":"Escherichia coli; Genotoxicity; Microbiology; Biology; Prebiotic; Carcinogenesis; DNA damage; Bacteria; Oligosaccharide; Molecular biology; Chemistry; DNA; Biochemistry; Gene; Genetics; Toxicity","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002106792,0.0001328924,0.000175789,0.00001021166,0.00008205325,0.0000158248,0.0001440153,0.00009963712,0.0001207929],"category_scores_gemma":[0.00009936454,0.00009818823,0.0000824398,0.0001137376,0.00006954736,0.000002124698,0.00007411226,0.00009504868,0.000004845224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002667077,"about_ca_system_score_gemma":0.0005803134,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006123031,"about_ca_topic_score_gemma":0.001021794,"domain_scores_codex":[0.9990662,0.0001661295,0.0001708567,0.0002884172,0.00008130315,0.0002271465],"domain_scores_gemma":[0.9993783,0.00002340411,0.00009835192,0.0003543039,0.00007593942,0.00006974587],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000105152,0.00003859361,0.007375689,0.0001344886,0.00004124639,9.787265e-7,0.00004033355,0.00001061645,0.9792244,0.00001316408,0.0126571,0.0003581973],"study_design_scores_gemma":[0.0005283664,0.0001486807,0.01533956,0.00002135452,0.00003531584,0.000003935459,0.00003110562,0.000007406567,0.9661787,0.000002648026,0.01758943,0.0001135435],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947371,0.004159987,0.00002525293,0.000219757,0.0001461823,0.0003390047,0.0001620865,0.000007361232,0.0002032742],"genre_scores_gemma":[0.9975289,0.0005172364,0.00008987758,0.0004857182,0.0001687738,0.00008715915,0.00007489052,0.00002058108,0.001026836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01304579,"threshold_uncertainty_score":0.4004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009276961745717224,"score_gpt":0.2772377985550708,"score_spread":0.2679608368093536,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}