{"id":"W3132074828","doi":"10.1016/j.genrep.2021.101045","title":"SARS-CoV-2 spillover transmission due to recombination event","year":2021,"lang":"en","type":"article","venue":"Gene Reports","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Université Laval","funders":"","keywords":"Pangolin; Biology; Transmission (telecommunications); Phylogenetic tree; Recombination; Evolutionary biology; Phylogenetics; Spillover effect; Genome; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Lineage (genetic); Coronavirus; Genetics; Vertebrate; Coronavirus disease 2019 (COVID-19); Ecology; Gene; Disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005112662,0.000332655,0.0002648972,0.000417271,0.0004729856,0.0007639971,0.0002735962,0.000588251,0.006257653],"category_scores_gemma":[0.001235398,0.000200063,0.0004202582,0.0002411399,0.0002404614,0.0004490893,0.0006007685,0.0006546892,0.001059493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004181662,"about_ca_system_score_gemma":0.0003281191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001305351,"about_ca_topic_score_gemma":0.0005623391,"domain_scores_codex":[0.9994854,0.0001294757,0.00002966013,0.0000978699,0.000074378,0.0001831865],"domain_scores_gemma":[0.9993693,0.0002221051,0.0001517478,0.0001048766,0.0000943234,0.00005754469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.003827965,0.001367381,0.2280417,0.0006907393,0.0003967574,0.03258193,0.002362504,0.003654912,0.6263053,0.02107552,0.01078891,0.06890631],"study_design_scores_gemma":[0.001350465,0.005582305,0.5163065,0.0003495562,0.001253597,0.09270168,0.004993075,0.03471786,0.2740976,0.01460287,0.05385305,0.0001915104],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9772468,0.001464436,0.005154841,0.0003276641,0.0001410376,0.0001512778,0.0003000041,0.00006345706,0.01515044],"genre_scores_gemma":[0.9966041,0.0002874148,0.0005441947,0.00009670209,0.00006492439,0.00001830004,0.0002630065,0.000004614772,0.002116912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006257653,"threshold_uncertainty_score":0.02093393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04072813969621847,"score_gpt":0.3571295969101115,"score_spread":0.3164014572138931,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}