{"id":"W3132074828","doi":"10.1016/j.genrep.2021.101045","title":"SARS-CoV-2 spillover transmission due to recombination event","year":2021,"lang":"en","type":"article","venue":"Gene Reports","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Manitoba; Université Laval","funders":"","keywords":"Pangolin; Biology; Transmission (telecommunications); Phylogenetic tree; Recombination; Evolutionary biology; Phylogenetics; Spillover effect; Genome; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Lineage (genetic); Coronavirus; Genetics; Vertebrate; Coronavirus disease 2019 (COVID-19); Ecology; Gene; Disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004943397,0.0001523442,0.0003002026,0.0001464457,0.00007000874,0.00003015505,0.0000537218,0.0001226724,0.00005473858],"category_scores_gemma":[0.0002497739,0.0001383148,0.0001673469,0.000459806,0.00001711337,0.00006604244,0.00005926303,0.0001738237,0.0001131448],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001964726,"about_ca_system_score_gemma":0.0005639596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001021235,"about_ca_topic_score_gemma":0.00001980653,"domain_scores_codex":[0.9979538,0.00005227324,0.0004502133,0.0005330784,0.0006765032,0.0003340768],"domain_scores_gemma":[0.9989162,0.00002470195,0.00008216581,0.0005889572,0.0003177409,0.0000702007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006932244,0.0002329585,0.00345801,0.00007190556,0.00003793817,0.01207907,0.0001678322,9.222611e-7,0.9213618,0.00001174883,0.004750945,0.05775756],"study_design_scores_gemma":[0.0003282721,0.0001096078,0.005355272,0.00007160315,0.00002536818,0.002790993,0.00001427747,0.00004079703,0.652557,0.0003446045,0.3382595,0.0001027716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854535,0.0006650108,0.003407837,0.002192935,0.0004355201,0.0004289889,0.000001280987,0.00007465642,0.007340235],"genre_scores_gemma":[0.9701431,0.00001599542,0.001475842,0.02719407,0.0002251369,0.00004966836,0.00002318686,0.00004337578,0.0008296288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3335085,"threshold_uncertainty_score":0.5640314,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04072813969621847,"score_gpt":0.3571295969101115,"score_spread":0.3164014572138931,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}