{"id":"W3132660211","doi":"10.1099/mgen.0.000510","title":"Comparative genomics of ST5 and ST30 methicillin-resistant Staphylococcus aureus sequential isolates recovered from paediatric patients with cystic fibrosis","year":2021,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Secretaría de Ciencia y Técnica, Universidad de Buenos Aires; Universidad de Buenos Aires; Agencia Nacional de Promoción Científica y Tecnológica; Consejo Nacional de Investigaciones Científicas y Técnicas; Secretaria de Ciencia y Tecnica, Universidad de Buenos Aires; Public Health Agency; Public Health Agency of Canada","keywords":"Staphylococcus aureus; Virulence; Biology; Microbiology; Antibiotic resistance; Pathogen; Antimicrobial; Drug resistance; Human pathogen; Virology; Cystic fibrosis; Methicillin-resistant Staphylococcus aureus; Gene; Antibiotics; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001168859,0.0002053567,0.000308039,0.0005462627,0.0002246551,0.0002701961,0.0001037712,0.0002681963,0.000683677],"category_scores_gemma":[0.0006126066,0.0001070664,0.0002857094,0.0006163809,0.0002094165,0.0001165449,0.0002697282,0.0002614993,0.0001305163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001789553,"about_ca_system_score_gemma":0.0001795341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002275149,"about_ca_topic_score_gemma":0.00207332,"domain_scores_codex":[0.9998069,0.000025989,0.00001897094,0.00005709367,0.00004752736,0.00004348315],"domain_scores_gemma":[0.9996812,0.00007234063,0.000128645,0.00001680212,0.00003617467,0.00006486563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008654343,0.0000839622,0.4938526,0.0001770594,0.0001150958,0.004267512,0.002602042,0.0003910284,0.48314,0.0001619078,0.0002859214,0.01405751],"study_design_scores_gemma":[0.000009170395,0.0002853202,0.9878626,0.00001327357,0.00003406465,0.003954026,0.0006040747,0.0002628385,0.006079854,0.00002536065,0.0008634258,0.00000602697],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994642,0.000121689,0.000107546,0.00001075637,0.000001501056,0.000003986541,0.0001877211,0.00000155815,0.0001010448],"genre_scores_gemma":[0.9988155,0.0001207486,0.0003301012,0.00002210703,0.000004076008,0.000006209618,0.000598773,0.000003988987,0.00009853522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002275149,"threshold_uncertainty_score":0.004523873,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01664619181719704,"score_gpt":0.2451660400986866,"score_spread":0.2285198482814896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}