{"id":"W3132899079","doi":"10.3389/fmicb.2021.637813","title":"The Emergence of Invasive Streptococcus pneumoniae Serotype 24F in Lebanon: Complete Genome Sequencing Reveals High Virulence and Antimicrobial Resistance Characteristics","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Univerzita Karlova v Praze; Pfizer","keywords":"Multilocus sequence typing; Serotype; Streptococcus pneumoniae; Biology; Virulence; Antibiotic resistance; Microbiology; Typing; Genome; Penicillin; Whole genome sequencing; Genetics; Genotype; Gene; Antibiotics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002574395,0.0004548157,0.0003314647,0.001177794,0.000327692,0.0005725086,0.0002146252,0.0003884335,0.0006367654],"category_scores_gemma":[0.0003457944,0.0001159432,0.0003034255,0.001023735,0.0002000493,0.0001517383,0.0002410668,0.0002346955,0.0001953662],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005171552,"about_ca_system_score_gemma":0.0003929493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008375422,"about_ca_topic_score_gemma":0.007585399,"domain_scores_codex":[0.9998168,0.00002280036,0.000009769833,0.0000486269,0.00003528602,0.00006668185],"domain_scores_gemma":[0.9997783,0.00002872767,0.00009164222,0.000008062881,0.00004946137,0.00004378818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008794959,0.0001338057,0.6115279,0.0003405861,0.0001791035,0.008674554,0.001631547,0.001359558,0.2988378,0.0002337878,0.00134043,0.07486149],"study_design_scores_gemma":[0.00001769132,0.0002361898,0.9809632,0.00004968459,0.00006986706,0.003110374,0.001363195,0.0009209422,0.007367063,0.0001354289,0.005745505,0.00002090697],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970796,0.001019531,0.0002943262,0.00009140836,0.000008345315,0.000008829756,0.001248453,0.000007566071,0.0002419932],"genre_scores_gemma":[0.9952192,0.0007371796,0.0011347,0.00007943527,0.00002430127,0.00001427733,0.002375558,0.000007632446,0.0004076761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008375422,"threshold_uncertainty_score":0.01665336,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01364018929177773,"score_gpt":0.2339923173829658,"score_spread":0.220352128091188,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}