{"id":"W3133442897","doi":"10.7554/elife.63409.sa2","title":"Author response: COVID-19 CG enables SARS-CoV-2 mutation and lineage tracking by locations and dates of interest","year":2021,"lang":"en","type":"peer-review","venue":"","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fusion Genomics (Canada); University of British Columbia","funders":"","keywords":"Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Lineage (genetic); 2019-20 coronavirus outbreak; Tracking (education); Mutation; Biology; Evolutionary biology; Virology; Computational biology; Genetics; Medicine; Gene; Outbreak; Infectious disease (medical specialty); Psychology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.003594241,0.001281082,0.001002387,0.001167746,0.00174814,0.003356519,0.001530407,0.009838023,0.3038258],"category_scores_gemma":[0.0312368,0.0005911911,0.00125248,0.000839106,0.0009196808,0.00192722,0.003648265,0.007354605,0.1582837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001430123,"about_ca_system_score_gemma":0.002498405,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003673795,"about_ca_topic_score_gemma":0.005147852,"domain_scores_codex":[0.9968394,0.0008156999,0.0003411546,0.0004464614,0.00106402,0.0004932545],"domain_scores_gemma":[0.9885153,0.003366835,0.0009329607,0.0007622588,0.004617815,0.001804812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000593744,0.000005713632,0.0001748222,0.00006317334,0.000003939416,0.0000453145,0.00002874147,0.00002038256,0.0001027112,0.0001178863,0.9956067,0.003771168],"study_design_scores_gemma":[0.00007025558,0.00003907751,0.0006788374,0.0001913288,0.0000107643,0.00008818902,0.0002369207,0.0001364418,0.0002232652,0.0004607436,0.9978337,0.00003052862],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"other","genre_scores_codex":[0.001988582,0.001927195,0.004514356,0.6196899,0.2437842,0.000698207,0.03262732,0.01200673,0.08276344],"genre_scores_gemma":[0.015453,0.002531687,0.005687823,0.6416117,0.0514275,0.001217908,0.01635335,0.003199541,0.2625174],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.3038258,"threshold_uncertainty_score":0.993008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08902092506331066,"score_gpt":0.3821808514665472,"score_spread":0.2931599264032365,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}