{"id":"W3133785696","doi":"10.1101/2021.03.02.433518","title":"An ancient retroviral RNA element hidden in mammalian genomes and its involvement in coopted retroviral gene regulation","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Gene; Genetics; RNA; Genome; RNA splicing; Reporter gene; Gene expression; Regulation of gene expression; Endogenous retrovirus; Virology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001981066,0.0002362768,0.0002201502,0.0003453259,0.000177755,0.0003745858,0.0001964063,0.0003402052,0.0006823637],"category_scores_gemma":[0.000146933,0.0001614984,0.0003703098,0.0001709823,0.0003625771,0.0002321207,0.0003130065,0.0004658658,0.0003559727],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002851243,"about_ca_system_score_gemma":0.0001208176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002019697,"about_ca_topic_score_gemma":0.0002293514,"domain_scores_codex":[0.9997507,0.00003222127,0.00001827458,0.00009637209,0.00006936293,0.00003314228],"domain_scores_gemma":[0.9998257,0.00003775525,0.00005189134,0.00002750299,0.00002954419,0.00002772158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003216359,0.000005990762,0.0005751713,0.00002110304,0.000003908169,0.00009916006,0.00001460448,0.00002491635,0.9981827,0.0002221704,0.000008539336,0.0008096887],"study_design_scores_gemma":[0.00001497924,0.000186699,0.03311201,0.00002218778,0.00003365827,0.002129023,0.00009712864,0.003338442,0.9557596,0.0003816881,0.004909484,0.00001532022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845234,0.003226708,0.009937184,0.00006109926,0.000026757,0.00002329584,0.0001960129,0.0001060255,0.001899448],"genre_scores_gemma":[0.993602,0.0004699074,0.00370815,0.0000502103,0.00001044457,0.00001346941,0.0003455202,0.00002036961,0.001779905],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006823637,"threshold_uncertainty_score":0.002282679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01697740183887144,"score_gpt":0.2090031212942003,"score_spread":0.1920257194553288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}