{"id":"W3134008084","doi":"10.1186/s12284-021-00468-x","title":"OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species","year":2021,"lang":"en","type":"article","venue":"Rice","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Institute of Genetics; Japan Agency for Medical Research and Development","keywords":"Oryza rufipogon; Biology; Genome; Oryza; Oryza sativa; Single-nucleotide polymorphism; Genetics; Nucleotide diversity; Genotype; Genomics; Botany; Gene; Haplotype","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000737437,0.0000672713,0.00009658511,0.00002821508,0.00003299008,0.000007925468,0.0001037245,0.00004816927,0.0001469279],"category_scores_gemma":[0.0000421285,0.00006678179,0.00003749584,0.00008892621,0.0000345033,0.000001966244,0.0001476397,0.00003786456,0.0000169329],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003537413,"about_ca_system_score_gemma":0.00004866401,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000533534,"about_ca_topic_score_gemma":0.00005929874,"domain_scores_codex":[0.9994918,0.00002777489,0.0001008496,0.0001811045,0.00007695534,0.0001215942],"domain_scores_gemma":[0.9996787,0.000009156474,0.00003580227,0.0001887203,0.00005173207,0.00003585189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003380521,0.00009478952,0.01271084,0.0000559889,0.00002654468,0.00004648253,0.0001318357,0.00005202837,0.9811726,0.0002420883,0.005083345,0.0003496193],"study_design_scores_gemma":[0.001241694,0.0001756673,0.1193932,0.00007211985,0.00004881215,0.00004629621,0.002987734,0.00002856152,0.6299017,0.0000881876,0.2456028,0.0004132552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9862534,0.001200708,0.0001616831,0.00006378462,0.00008235143,0.00003393525,0.0001349217,0.000003510232,0.01206574],"genre_scores_gemma":[0.9939932,0.0008602166,0.000761763,0.0001260182,0.00006975858,7.092293e-7,0.0001526696,0.000003812045,0.004031827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3512709,"threshold_uncertainty_score":0.2723283,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.020459147680222,"score_gpt":0.2276145286611765,"score_spread":0.2071553809809545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}