{"id":"W3134058838","doi":"10.3390/microorganisms9030490","title":"Comparative Genomic Analysis of Three Pseudomonas Species Isolated from the Eastern Oyster (Crassostrea virginica) Tissues, Mantle Fluid, and the Overlying Estuarine Water Column","year":2021,"lang":"en","type":"article","venue":"Microorganisms","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Savannah River National Laboratory; University of Illinois at Urbana-Champaign; U.S. Department of Energy; National Science Foundation","keywords":"Crassostrea; Oyster; Mantle (geology); Eastern oyster; Estuary; Water column; Biology; Geology; Fishery; Oceanography; Paleontology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001985546,0.0002748015,0.0007062049,0.00006119851,0.0003195379,0.00009484751,0.0003977317,0.0001458819,0.002215216],"category_scores_gemma":[0.00001149951,0.0001482162,0.0002261914,0.0002714547,0.0006088965,0.00006617135,0.0005708496,0.000220132,0.0004233051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002618586,"about_ca_system_score_gemma":0.00002273829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00112609,"about_ca_topic_score_gemma":0.002550974,"domain_scores_codex":[0.9984697,0.0002918832,0.0004236253,0.0004396536,0.00005016358,0.0003249731],"domain_scores_gemma":[0.9989394,0.0002073146,0.0001553823,0.0005695325,0.0001068485,0.00002152687],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002775679,0.00008140004,0.01690292,0.000007471906,0.005655931,0.0000130809,0.004291078,0.000004803624,0.9690257,0.0003101212,0.003345528,0.00008442622],"study_design_scores_gemma":[0.006085161,0.00009243001,0.1511061,0.00005136279,0.008014389,0.00003282588,0.005716308,0.0001296423,0.7555648,0.0002181062,0.0724354,0.0005534128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907265,0.006274295,0.0004415942,0.0009695875,0.0002135289,0.0003817765,0.0002461267,0.00003226607,0.0007143322],"genre_scores_gemma":[0.9879723,0.0001392114,0.00006343333,0.0004314051,0.00003505048,0.000009215138,0.001296492,0.00001999622,0.01003292],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2134608,"threshold_uncertainty_score":0.9986969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01676867660503059,"score_gpt":0.2236339182359851,"score_spread":0.2068652416309545,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}