{"id":"W3134153430","doi":"10.3390/antibiotics10030267","title":"Whole-Genome Sequencing Reveals the Presence of the blaCTX-M-65 Gene in Extended-Spectrum β-Lactamase-Producing and Multi-Drug-Resistant Clones of Salmonella Serovar Infantis Isolated from Broiler Chicken Environments in the Galapagos Islands","year":2021,"lang":"en","type":"article","venue":"Antibiotics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; McGill University","funders":"Canadian Food Inspection Agency","keywords":"Biology; Multilocus sequence typing; Prophage; Phylogenetic tree; Genetics; Whole genome sequencing; Salmonella; Genome; Single-nucleotide polymorphism; Typing; Locus (genetics); Gene; Multiple drug resistance; Drug resistance; Genotype; Escherichia coli; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005963704,0.0002545814,0.0003607938,0.00004389263,0.00009929642,0.00004044899,0.0005589782,0.0001745684,0.000008123341],"category_scores_gemma":[0.0002246886,0.000162584,0.00009478237,0.0003080568,0.0003766308,0.00001455869,0.0003360257,0.0002657936,0.000001309236],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003019446,"about_ca_system_score_gemma":0.0001046983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003553666,"about_ca_topic_score_gemma":0.0008824134,"domain_scores_codex":[0.997801,0.0004300647,0.0005935931,0.0005537899,0.0002735217,0.0003480459],"domain_scores_gemma":[0.9983012,0.0001167274,0.0003589613,0.00114986,0.00003949218,0.00003372728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007739839,0.00008860824,0.1851608,0.00004979387,0.00005489271,0.00001980931,0.001301467,0.0001542485,0.813021,0.00001174334,0.00002937487,0.00003083087],"study_design_scores_gemma":[0.0004266473,0.00004072503,0.5713089,0.0001526729,0.00003384957,0.00001462248,0.0008921874,0.0002314489,0.4265712,0.00004703749,0.0001359471,0.0001447632],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969106,0.001720686,0.0001869128,0.0004591766,0.0001079873,0.0003715711,0.0001863662,0.000003419374,0.00005324822],"genre_scores_gemma":[0.9969786,0.001579719,0.0008616493,0.0001380173,0.00006298727,6.811537e-7,0.00009536939,0.00003129327,0.0002516501],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3864498,"threshold_uncertainty_score":0.6629981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01062928833838618,"score_gpt":0.2260075417260425,"score_spread":0.2153782533876563,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}