{"id":"W3134153430","doi":"10.3390/antibiotics10030267","title":"Whole-Genome Sequencing Reveals the Presence of the blaCTX-M-65 Gene in Extended-Spectrum β-Lactamase-Producing and Multi-Drug-Resistant Clones of Salmonella Serovar Infantis Isolated from Broiler Chicken Environments in the Galapagos Islands","year":2021,"lang":"en","type":"article","venue":"Antibiotics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency; McGill University","funders":"Canadian Food Inspection Agency","keywords":"Biology; Multilocus sequence typing; Prophage; Phylogenetic tree; Genetics; Whole genome sequencing; Salmonella; Genome; Single-nucleotide polymorphism; Typing; Locus (genetics); Gene; Multiple drug resistance; Drug resistance; Genotype; Escherichia coli; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005750862,0.0002743396,0.0001236874,0.0004913086,0.0001516926,0.0002540958,0.0001164657,0.0002157146,0.0004725557],"category_scores_gemma":[0.0002146011,0.00009097904,0.0001923294,0.0004324447,0.0001497618,0.00007792199,0.0002693166,0.0001837681,0.0001347956],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001158529,"about_ca_system_score_gemma":0.0001017808,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002621159,"about_ca_topic_score_gemma":0.003162201,"domain_scores_codex":[0.9999425,0.000006192672,0.000005615149,0.00001954083,0.00001354247,0.00001249886],"domain_scores_gemma":[0.9998835,0.00002259847,0.00003892679,0.00001425243,0.00001949753,0.00002110121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002766487,0.00006197707,0.1628468,0.0001152438,0.00007810443,0.001264751,0.0009238332,0.0003290368,0.8208297,0.00006978185,0.0001422769,0.01306186],"study_design_scores_gemma":[0.000008743918,0.0001281614,0.9724515,0.00001704437,0.00006574985,0.002020703,0.0007074683,0.0005146387,0.0222442,0.00003966791,0.001794828,0.000007124964],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989573,0.0000879916,0.0001398622,0.00001623415,0.000001308067,0.00000481579,0.0004804215,0.000006624226,0.0003054238],"genre_scores_gemma":[0.9976661,0.000113999,0.0004443087,0.00002812221,0.000001875827,0.00000684698,0.001426094,0.000003418011,0.0003092218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002621159,"threshold_uncertainty_score":0.00521183,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01062928833838618,"score_gpt":0.2260075417260425,"score_spread":0.2153782533876563,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}